Lates calcarifer (barramundi perch): 108899514
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Entry
108899514 CDS
T04895
Name
(RefSeq) RNA-binding protein 8A
KO
K12876
RNA-binding protein 8A
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03015
mRNA surveillance pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108899514
09122 Translation
03013 Nucleocytoplasmic transport
108899514
03015 mRNA surveillance pathway
108899514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108899514
03041 Spliceosome [BR:
lcf03041
]
108899514
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108899514
Spliceosome [BR:
lcf03041
]
Complex C
Other components
EJC/TREX
108899514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
108899514
NCBI-ProteinID:
XP_018555509
UniProt:
A0A4W6BVL6
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All DBs
Position
LG15:5308605..5312514
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AA seq
175 aa
AA seq
DB search
MADVLDLHEAGGEDFPMDEDGDESIHKLKEKAKKRKGRGFGSEEGARSRIKEDYDTVEQD
GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFSEFGEIKNLHLNLDRRTGYLKGYALVE
YETYKEAQAAMEGLNGQDLMGQPISVDWGFVRGPPKNKRRAGGRRRSRSPDRRRR
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgttttggaccttcatgaagcgggaggcgaggactttcctatggatgaggat
ggcgatgaaagcatccacaagctgaaagaaaaggccaagaagaggaaaggacgaggcttt
ggctcagaggaaggcgccaggtccagaatcaaagaggactatgatactgtggagcaggat
ggggatgagccaggacctcagagatctgtggagggttggatcctgtttgtgacaggtgta
catgaagaggccacagaggaagacatccatgacaaattttcagagtttggagaaattaag
aacctgcatctcaacctcgaccgcagaacaggctacctcaaggggtatgcactggtggag
tatgagacatacaaagaggcccaggcagccatggaagggctcaatggtcaggacctgatg
ggccagcctatcagcgtggactggggatttgtcagagggccccccaagaacaagaggagg
gctggcggacggagacgcagcagaagtccagacaggaggcggcgttga
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