Lates calcarifer (barramundi perch): 108899726
Help
Entry
108899726 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04382
Cornified envelope formation
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04518
Integrin signaling
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108899726
04518 Integrin signaling
108899726
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108899726
09142 Cell motility
04820 Cytoskeleton in muscle cells
108899726
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108899726
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108899726
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108899726
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108899726
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108899726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108899726
NCBI-ProteinID:
XP_018555860
UniProt:
A0AAJ7QH20
LinkDB
All DBs
Position
LG1:15449761..15487412
Genome browser
AA seq
1640 aa
AA seq
DB search
MLLQSCTLLLLAALYSSVDLTGAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGPMGPKGDVGEAGAPGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGAPGIPGCN
GTKGERGRDGAPGFAGLQGPPGIPGLPGMKGDPGGVIGIVPLKGDRGFPGTPGLPGPAGP
PGPTGPPGPRGYQGPKGDPGPPGPPGEKGDRLAFVSEKGEKGEPGFRGPPGPPGPPAQGV
EGQTTVHVPGPQGERGPPGEKGDNGKCIPYLDGVKGDPGPPGQRGKPGKDGEDGQKGEKG
FPGVPGYTGSQGEKGERGPPGYGNGAPGPPGPPGLPGLQGEKGFPGPQGEAGPPGRHIEG
PRGEKGQKGDLGEKGDRGMEGESMVGPPGQPGITGPPGPPGLPIDPNECNIEKGAPGPPG
PPGLQGEVGQKGDKGDTCVQCEAAGLPGLPGAPGPKGERGPPGQVGGKGEKGLSGPPGQP
GRPGTPGSPGLMGAPGAVGEPGDIFVAPGLKGDKGLPGAAGSPGRPGLDGQPGRDGLPGV
PGLKGEPAKEGIKGERGPDGDPGLIGVPGERGPPGLPGIGRPGEPGEKGSPGRPGHPGAP
GLPGAKGEPGVGVSTPGPQGAPGPRGEPGRPGLQGDRGLPGDPGLPGFPGQKGEHGLPGI
GLPGPTGPKGISGIPGAPGLPGEPGRPGQDGLTGQPGAPGQKGEPGRGLPGPKGLQGLTG
ITGFPGEKGNIGLPGVPGREGETGPPGPQGIKGDVGPPGPPGLVGLPGAPGKGSPGAPGP
QGPAGEPGPHGREGVKGEKGYPGPPGLDMPGPQGEKGLPGFPGPAGSKGLPGPPGLPGRD
GLIGHQGPKGEMGVMGTPGVPGFPGQPGTPGSPGLRGDPGITGPRGEIGETGPKGERGEQ
GLQGPPGNMSKVEMENMKGEKGDTGDTGNPGLTGEKGHRGMPGDPGLRGKDGEPGLPGQQ
GDKGDPGVPGEPGSMGPPGQKGSVGEMGIPGVVGPKGTKGDIGTPGHPGFRGTDGQKGDM
GVPGEPGIGIPGLPGDKGLTGQPGFPGSPGEKGQRGQEGMPGKPGLQGAKGEKGSIGYPG
QPGRPGEKGTPGLPGSAGEPGHDGRPGEGGLQGPPGPPGEKGDPGVDGIPGSSGERGDPG
LPGRGFPGPPGALGIKGDKGSPGFPGTPGHPGVPGIKGDKGLPGPQGPHGEPGERGVPGI
SLEGPKGERGETGQPGEAGSQGAPGPAGVPGRQGQKGDKGDQGPPGFQGETGQKGDTGVP
GLPGQSGLPGIDGQKGERGLQGVPGFPGVKGNVGDSGFKGEIGDRGFPGEKGTQGPPGPP
GPHTFIKGDIGFPGSQGPSGPQGPQGFPGQKGQQGVTGIPGPKGEDGLPGYHGQPGAKGE
PGLPGPEGPRGYPGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQTVEVPFCPEGTSLIYD
GYSLLYIQGNERSHGQDLGTAGSCLKKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPRGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPTT
LKAGSLRTHISRCQVCMKRT
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgctgttacagtcctgcactctgttactgctggcggctctctactcaagtgtagacctg
acgggggctgagggctgcggggcatcatgtggaaaatgtgactgcagtggtgtaaaagga
gcaaagggtgagcggggatttcctggtcttcaaggtaacatgggattcccaggaatgcag
ggacctgagggccctccagggccaatgggcccaaagggagatgtgggtgaagctggggct
cctgggctgaaaggagtgaggggtcctcctggtctgccaggtttcccaggaaacccagga
ctaccaggcatcaatggaaatgatggcccaccaggtgcaccaggtatcccaggatgtaat
gggactaagggagagagaggaagggatggcgctcctggttttgctggtcttcaaggacct
ccgggtattccaggacttcctggaatgaagggtgaccctggtggtgtgattgggattgtt
cccctgaaaggagacagaggattccctggcacacctggattacctggaccagctggacct
cctggacctaccggacctccaggacctcgtggctatcaaggacccaaaggtgatcctggg
cctcctggtcctccaggagagaagggtgacaggctggcttttgtgagtgagaaaggtgaa
aagggtgagccaggatttcgtggcccacctggtccccctggacctccagcacagggagtg
gagggacagaccacagtgcatgtacctggaccacagggtgaaagaggacctccaggagag
aaaggagataacggaaaatgcatcccttatcttgatggagtcaaaggtgatcctggccca
cctggacaaagaggtaaacctggcaaggatggagaggatggacaaaagggagaaaagggc
tttccaggagttcccggatatactggttcccagggtgaaaaaggagaaagaggaccacct
ggttatggtaatggtgcccctggtcctcctggtcctcctggtctcccggggttacaagga
gaaaaaggttttccagggcctcagggagaggcaggtccaccaggccggcacattgaaggg
cctcgaggagagaagggtcagaagggagacttgggtgagaaaggagacaggggtatggaa
ggagagtctatggttggacctccaggacaaccggggatcactggaccccctggaccacca
ggacttccaattgaccccaatgaatgtaacatcgagaaaggtgcccctggcccacctgga
cctccagggttacaaggggaagtgggacagaaaggtgacaaaggagacacctgtgttcag
tgtgaagctgctggcctacctggattacctggtgccccagggcctaaaggagagagagga
cctcctgggcaagtaggaggcaaaggagaaaagggtctctctggccctcctggacaacct
ggaagacctggtactccaggcagtcctggactgatgggagctcctggtgctgttggtgag
cctggggacattttcgtagctcctggtctgaagggagacaaaggtcttcctggtgctgct
ggttcaccagggaggccaggattggatggacagccaggtagagatgggcttccgggtgta
cctggcctcaaaggagaacccgccaaagagggcattaagggtgagcgtggaccagatggg
gaccctggtcttattggggtcccaggagagaggggcccccccggtctgccaggcataggt
cgaccaggagagcctggagagaaaggcagcccagggagaccaggccatcctggagctcct
ggattacctggtgcaaaaggtgaacctggtgtaggagtaagcactccaggacctcaggga
gcacctgggccacgaggagaacctggcagacctggacttcaaggggacagaggcctgccg
ggagacccagggttgccaggtttccctggacagaagggtgaacatggacttcctggaatt
ggtcttcctggcccaacgggtccaaaaggaatcagtggaattccaggagctccaggatta
ccaggagagccaggaagaccaggacaggatggcttaactgggcaacctggtgcacctgga
caaaaaggtgaaccagggcggggtcttccaggcccaaaaggtttgcagggtctcacagga
attactggcttcccaggagagaaaggtaacattggactacctggtgttcctggacgagaa
ggcgagacaggaccaccaggacctcagggcatcaaaggtgacgtgggacccccagggcct
cctggactggttggcttaccgggtgctccaggaaaaggctcacctggagctcctggacca
cagggaccagctggagagcctggaccgcacggtagagaaggtgtaaagggagaaaagggc
taccctggtcctcctggtctggacatgccagggcctcagggagaaaagggtctccctgga
ttcccaggacccgcaggctctaaaggattgccagggccaccaggcttaccaggcagggat
gggctgattggacaccaaggtcctaaaggtgaaatgggagtcatggggacaccaggagta
ccaggatttcctggacaacctggtacacctggatctcctggtctgagaggtgatcctggt
attactggaccaagaggtgaaattggagagactggacctaaaggagaaaggggagagcaa
ggccttcagggacctcctgggaacatgagcaaagttgagatggagaacatgaagggggag
aagggagatactggagacacaggtaaccctggactcactggagagaagggccaccgtgga
atgcctggagaccctggactgcgaggcaaagatggagagcctggattacctggacaacaa
ggtgacaaaggagaccctggtgttcctggagagcctggcagcatgggaccacctggacag
aagggcagtgtaggagaaatgggaataccaggtgtggttggtccaaaaggtactaaagga
gacattggtacaccgggacatccaggattcagaggcacagatggacagaaaggagacatg
ggagtacctggtgagccaggtatcgggattccaggacttccgggagacaagggtctaacc
ggccagccaggatttccaggatcaccaggagagaagggtcagaggggtcaagagggaatg
cctggcaaaccagggctgcaaggagccaaaggagaaaaaggaagcattggatatccaggt
caaccaggtagaccaggtgagaagggtacccctgggcttcctgggtctgcaggagaacct
ggtcatgatggccggcctggtgaaggtggcttgcaggggcctcctggtcctcctggagag
aagggagatcctggagtagatggcatcccgggatcctcaggggagagaggagacccaggt
ttgcctggccgaggtttcccagggccacctggagcgcttggtatcaaaggtgacaaaggt
agtcctggcttccctggcactccaggtcatccaggtgtccctggtatcaaaggtgacaag
ggactcccgggcccacagggaccacacggtgagccaggagagaggggggttccaggtatc
tctctagagggaccaaaaggagaaaggggagaaacaggtcaaccaggagaagcaggatcc
caaggagcaccaggacctgctggtgtgccaggaagacagggccaaaagggtgacaaagga
gatcagggcccccctggtttccagggagagacaggacaaaagggtgacactggagttcct
ggacttcctggacaatctggtcttccaggtattgatggacagaagggagagaggggatta
caaggtgtccctggcttcccaggtgtaaagggtaatgtcggggactctgggttcaaaggt
gagattggagacagaggattcccaggagaaaaaggtactcaaggccctcctggtcctcct
ggcccccacaccttcatcaaaggagacattgggttcccaggaagtcaaggtccctcaggg
ccacaggggccgcaggggtttcctggacagaaaggacagcaaggagtgacaggtattccg
ggaccaaaaggtgaagacggcctccctggatatcatggtcagcctggagccaaaggagag
cctggcctgccaggaccagaaggacccaggggatacccaggacccccaggacctgatggt
gttccaggtcaagtgggtccacccggaccctcctccatggatcatgggttcctggtaacc
cgtcacagccaaacagtagaagttccattctgccctgagggaacctcactcatatatgat
ggctactccttgctctacatacaaggcaatgaacggtctcacggacaggacttaggtacg
gcgggcagctgtttaaaaaagttcagccccatgcccttcctgttctgtaacatcaacaac
gtgtgcaactttgcctctcgtaacgactactcctattggctcacctcccctgagcccatg
cccatgagcatggcacctattactggtgaaagcatcaaacctttcatcagcaggtgtgct
gtgtgcgaagccccagccatggtgatagcagttcacagtcagaccatcatgattcctcca
tgtcctcgtggctgggattctctgtggattggctactcctttgtcatgcataccagtgct
ggtgccgagggttcaggccaggctctggcctctcctggttcctgtctggaggaattccgc
agtgctccattcattgagtgtcacggtcgtggtacctgcaattactacgccaactcctac
agcttctggcttgccactatcgaagacaatgagatgtttacgaaacctgtcccaacaacg
ctaaaagcgggtagtctccgaacacacataagccgctgtcaggtgtgcatgaagaggaca
taa
DBGET
integrated database retrieval system
