Lates calcarifer (barramundi perch): 108899852
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Entry
108899852 CDS
T04895
Name
(RefSeq) zinc finger BED domain-containing protein 4
KO
K24640
zinc finger BED domain-containing protein 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108899852
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
108899852
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-BED
Dimer_Tnp_hAT
zf-C2H2_12
Flu_PB2_4th
Motif
Other DBs
NCBI-GeneID:
108899852
NCBI-ProteinID:
XP_018556056
UniProt:
A0A4W6FIH9
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Position
LG18:3243998..3252008
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AA seq
1262 aa
AA seq
DB search
MDGEEEVSHMSEDMVTETNGSIEIKKREAKGNCLKIEGQDGYVFKSYSITPHETADARSP
ACSSITLDKDSPPSPHLSSQGDKQLESNEAKDTDPASPALSNKFLNTDTEENAESEKYEN
SNEGSQHIKEEIGDANGMEEETQEDERLAFGSSIGPFVTRDGDEYSNLLSGYTSTLYDVA
MDAVTQSLLSSMRSHTNPRKKSPAWNHFCISPRDSTKAICLYCMKEFSRGKNEKDLSTSC
LMRHVRRAHPTVLLQDGADASSNNLTSSLASSLIPPSPSSPKNGDLTNSVTTSASKNTSP
STSSAENSDLSSKEVLPKVEPKLEQYANVADAVGSMLSSSHSNENNLEEMSDGGPERLPG
TPKSSSSRRRSAVWKHFYLSPADNSKAVCIHCMNEFSRGKNGKDLGTSCLIRHMWRAHKE
VVIEENGQGNHIPPPYTNPPSLLSRTQLQDPLEVKKESPLLPSSPETISDELPQSMEESM
DIKEESDEVMNLSGQESSLNLSLKAQGEDTPLTSSPCDLSEGPSLNQDHSVFQQNKKIMK
RVKSEVWHHFIVSPVDQLKALCRYCPCVISRGKRGDFGTSCLMRHLMRRHPDVLKNQKST
DEKESSSPHPYTNLTAADAVSTKETDSPASEKKPQTLPVFSKKTSKLWNHFSISPADPTK
VVCLHCSRTISRGKKTTNLGTSCLFRHMQRFHGHVLESNNTISGDVPSAEIHVKQELMDT
SVYETEQNRERFDEHHPVAKKITKLIAEMLALDLQPSAMVENAGLNRLLEYLQPQYSLPP
SSYFTSTAIPDMYERVKDVVLTHLKEAEGGVVHFTTSIWVSSQTREYLTLTAHWATYESS
VRPQGQDFHCSALLSVSQIDCDHDMHDIPKQLEYLWDSWITSSGLKKGFTVTDNNTIRNT
LEDHGHVTMQCFGHTIDLIVSEAIKSQRMVQNLLSIARKICERVHRSAKAKEKLAELQRV
HQLPENQLIQDIPSKWRTSFFMLERLVEQKKAIDEMSIECNFREMISCDQWEVMLSVCNA
LKPFEVACREMSNRTATLGQVIPLIHILNRKIDLLFDETVGIDNMLKSLKEAMVSRMSAT
LHDPRYTWATMLDPRYKTSLFTEEEAEQCKQDLIRELDLSSSTSVAVKPPLPNGCNEAPV
SSNTAHSNRDNLWSLMADIRQKIKHEEKPKSSELAVLEYLEEDILDQSCDPLDYWNLKKF
LWPDLAKVAARYVGCPPSIIPAETLFSTASVNCALNQPRPLLENMEGLLFLKVNLPLIYF
QY
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggacggggaggaagaggtgtctcacatgagtgaggatatggtcactgaaactaacggc
tccatagaaattaaaaaaagagaggcgaaggggaactgcctgaaaattgagggccaggat
ggctacgtgttcaaatcttacagcattaccccccacgagactgcggatgcaaggtcacct
gcttgctcctcaataacactggataaagactctcccccttctccccatttatcttctcag
ggtgacaaacagctggagtcaaacgaagcaaaagacactgatccggcttctcccgctctt
tctaacaaatttctaaacactgatacagaggaaaacgcagagagtgaaaagtatgaaaac
agtaacgaaggaagtcaacatatcaaagaggagattggggatgcaaatggaatggaggag
gagacacaggaagatgaaaggctagcattcggtagctcaattggcccttttgtaacaaga
gatggcgacgagtatagcaatttattaagtgggtacacaagcaccctttatgacgttgcc
atggacgctgtcactcagagccttttgtcatctatgaggagccataccaacccaagaaaa
aagtctcccgcgtggaatcatttctgcatatcgccacgagacagtaccaaagcaatctgt
ttatactgcatgaaagagttcagtcggggtaagaacgagaaagacctcagtacaagttgt
ttaatgaggcacgtacgaagggctcaccccactgtgcttttacaagacggagcggacgca
tcctcaaataacctgactagctctcttgcctcatctttgatacctccctccccaagctca
ccaaaaaacggagacttgacaaatagcgtcactacttctgcctcaaagaacacttcaccg
tccacctcctcagctgaaaattcagacctgtcatccaaagaagtgttacccaaagtcgaa
ccaaaactagaacagtatgccaacgttgcagacgctgttggcagcatgctatcatcctca
cattccaatgaaaacaacctagaggaaatgtcagacggagggcccgagcgccttcccggg
accccgaaaagctcaagttcccgtcggagatcagctgtatggaaacacttctacctgtca
cctgctgacaactccaaagcagtatgtatccattgcatgaatgaattcagcaggggtaaa
aatggaaaagatctagggacaagctgtcttattcgtcacatgtggagggcccacaaagag
gttgtcattgaggaaaacggacagggcaatcacattcccccaccctatacaaacccaccc
tcacttttgtcccgcacccaactgcaggatccactggaagtaaaaaaagaatcacccctt
cttccatcctcaccggaaaccatatcagatgaactgccccaaagcatggaggaaagtatg
gatataaaagaggaatctgatgaggtgatgaatctctcagggcaggagtcttctctcaac
ctctccctcaaagcccagggggaggacacacccctgacttcctcaccatgcgacctctct
gagggtcccagcctcaatcaggatcattcagttttccagcaaaacaagaagatcatgaaa
cgggtgaaatccgaagtgtggcaccatttcatagtgtcaccggttgaccagttaaaagca
ctgtgccgttactgtccatgtgtcatcagtcgagggaaacggggcgactttggtacaagc
tgtctgatgaggcatcttatgagacgccacccagacgtcctcaaaaaccaaaaaagcaca
gatgagaaggaatcctcctcccctcatccctacaccaatctcactgcagcagacgcagtt
tcgaccaaagaaactgacagcccggctagtgagaaaaagccacaaaccctgcctgttttc
agtaaaaagacgtcaaaactgtggaaccatttctccatttcacctgctgaccccacaaag
gtggtttgtttgcactgtagccgcacaattagcagaggcaaaaagactacaaacctcggc
acaagctgcctcttcaggcacatgcagaggtttcacggacacgttcttgaaagtaacaat
acaatctcaggtgatgtgccgtctgctgaaattcatgttaaacaagagctcatggacact
tctgtttacgaaacggaacagaaccgtgagaggtttgatgaacaccacccggttgccaaa
aaaatcaccaaacttattgcagaaatgctcgcactggatcttcagccatcagctatggtg
gagaatgctggactgaacagactgctagagtacctccagcctcagtattctctaccaccc
tcttcttattttaccagcactgccataccagatatgtacgaaagggtgaaggacgttgtg
ctgacccacctgaaagaggctgaaggtggtgtcgtccacttcacaactagtatttgggtc
agtagccagacgagggaatacctgacccttactgcccattgggcgacgtacgagtcaagt
gtcagaccccaaggtcaggacttccactgctccgctcttctaagtgtctcgcagatagac
tgtgatcacgatatgcatgacatcccaaagcagctcgagtatctgtgggattcttggatc
acctcatcagggctgaaaaagggtttcactgtaactgataacaacaccatcagaaacacc
ttggaggaccatggccatgtcaccatgcagtgttttggacacactatagacctcattgtt
agcgaagccataaagagccagagaatggttcagaaccttctgagtattgcacgaaagatc
tgtgaacgagtgcaccgctcagcaaaggccaaggagaaactggctgagctccagagggtc
caccagctgccggagaaccaactgattcaggacatcccttccaaatggaggacgtccttt
ttcatgttggagcggctggtggagcagaagaaagccatcgacgagatgtcgatcgagtgc
aatttcagggaaatgatcagctgtgatcagtgggaggtgatgctgtcggtctgcaatgca
ctgaaacctttcgaagtcgcctgcagggagatgagcaaccgcactgccactctgggacaa
gtcataccactgattcacatcctcaacagaaagatagacctgctgtttgacgagactgtg
ggcatagacaacatgctcaagtctctgaaggaagccatggtgagcagaatgtcagcaact
ctgcacgatccgcgatacacctgggccaccatgctggacccacgatacaagacctcgctg
ttcacagaggaagaagccgagcaatgtaagcaagatctaatccgggagctggacttgtcc
tcttctacctcagttgcagttaagcctccgctgcccaatggctgcaacgaggcgcccgtt
tcatccaacaccgcccactcgaacagggacaacctctggtccctgatggctgacatccgg
caaaagataaaacacgaggagaagccaaagtcctcggagctggcagtgctggagtacctt
gaggaagacatccttgatcaaagctgtgaccccctcgactattggaacctgaaaaagttc
ctgtggcctgatcttgccaaagtagctgcccgttacgtgggctgccctcccagcatcatc
ccagcagagacactgttcagcacagctagtgtcaactgtgccctaaatcagcccagacct
ttactggaaaacatggagggtctgctgttcctcaaggtcaacctccctttgatttatttt
cagtactga
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