Lates calcarifer (barramundi perch): 108899990
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Entry
108899990 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: protein scribble homolog
KO
K16175
protein scribble
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
108899990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
LRR_8
LRR_14
LRR_4
PDZ_2
LRR_1
LRR_13
LRR_9
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
108899990
NCBI-ProteinID:
XP_050922615
UniProt:
A0AAJ8DKN4
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All DBs
Position
LG24:15142817..15203394
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AA seq
2051 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQTVPDEIFRYSRSLEELLLDANQLKELPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCRALEIADFSGNPLSRL
PDGFTQLRALAHLALNDVSLQTLPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELEVLPDTLGALPNLRELWLDRNQLSSLPPELGNLRRLVCLDVSENRLEELPSELN
GLLALTDLLLTQNLLEVVPDSIGCLKQLSILKVDQNRLTHLTDSIGECENLTELVLTENL
LQSLPRSLGKLKKLTNLNVDRNRLGSVPKELGGCASLNVLSLRDNRLGKLPAELADATEL
HVLDVAGNRLQNLPFALTNLNLKAMWLAENQSQPMLKFQTEDDERTGEKVLTCYLLPQQP
SPSLENLLQNSVDDSWTDSNLNRVSVIQFQEETKAEEEDDEAAAERRGLQRRATPHPSEL
KVMKKVIEERRNEAYSSRGDGEESPDPQEKRFSDLSNQSHDSQVSNSTLSATSHEDRQNV
TATSQKEDLVDGHSPQEEEELDEMEVEYIEPTVHFAEEPIIRGGDEDDEEDGEDGERSDE
EERPVFPAEKQRLIRKDTPHYKKHFKITKLPKPEAVAALLQGFSPDGLNSSTQAAEDEQD
EDEEQSIGTPQHHRRLEELEDSRQQVNSSQVKGVSFDQVNNLLIEPARIEEEEHTLTILR
QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEDGPAARAGVKVGDKLLEVNGVDLHEAEH
HTAVEALRSSGATVSMTVLRERMVEPENAITTTPLRPEDDYFPRERRSSGIAFNMETSPS
GPRQRLSTCLIRNDKGLGFSIAGGKGSTPYRTGDTGIYISRIAEGGAAHRDSTLHVGDRV
ISINGVDMTEARHDQAVALLTGTSPTIALLVERDLNAPGGSPGQSRARAHSPPPPEPSDS
PDQEEEGLSLHGNHLSRMEDEYPIEEVILVKSGGPLGLSIVGGSDHASHPFGINEPGVFI
SKVIPHGLACQSGLRVGDRILEVNSIDLRHATHQEAVRALLANKQEIRMLVRRDPSPPGM
QEIVIQKQPGEKLGISIRGGAKGHAGNPFDPTDEGIFISKVSSSGAAARDGRLQVGMRIL
EVNNHSLLGMTHTEAVRVLRAVGDSLVMLVCDGFDPNKVAAVEASPGIIANPFATGIVRK
NSMESISSIDRDLSPEEMDIIQKESEMVRETSQWEREEMEKVERMRLEREEATRLLEEET
ENIGTGPLKLDYKTLAALPTTSLQKVNRFSTSVTLAAPMEATLQAPLEPLGFGLGHPTTP
LSHMDPESCPSLNAEHDYLHGSQFSPNGTSSADSAGSSTTISSTFVPEEEEEECLVDSQP
ICFKENPFLVANRKGKGLPPGEQLLSGPPVGYGRQGQLQPWLFSKAPSSDFTRTDSPIRE
APYSPTIQPPSHHSSNSSLCAGRETRFANIHYTSTPTAKENTSSSTRPGAIQPVGRVRPS
TSPATPDGHSPNPFQHGPSPFNSQTSPRAPSPTSPDEFPMNVKQAYKAFAAVPRSLAVLE
PPQDLYGVRNNFHPKQPSPEPELYNEVFDDTDGQEGAGKGLTDKVSPRPSLASDRREYMN
LAAVPRLSRPSVDLQSPSPGGKDSPEQRSFRDRQKYFEIDVKQQTPEKPKPRVSLVGEDD
LKKMREEEARKFEQRAAEYLLDEDEEDEEEDLAKQVAQMKATGKVLLDGVEYKVEPVSTP
SQHCSTPPSYNITPPSYCGSSGPSSVDGKGDSQRNSLEDSFRLEQRPNSMTGLIPVYPGE
SAAPIRTAKAERRHQERLRMQSPELAVAPDKDLSPAEKRALEAEKRAMWRAARPCGLEED
VRQYEQDLAKRLYQARVRASQGTAAAPQPPTSSSTSSSAASQLRMKSLEQDALKAQMVIA
KSRDGKKRGTLDQLTESPSPAPTPSPTPMEELSPRGVTSPGRLSLSSKKFDYRQFAAIPS
SKPVYDIQSPDTVDDMKFIDDGSGNPGPTANPEAEVPTPLPATSALEEMALYSNKRKLRQ
GRRSLETAVPT
NT seq
6156 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccccctgtggcgctgcaaccgccacgtcgagtcggtggacaagcgg
cattgcaacttgcagacggtccctgatgagatattccgctacagtcgcagcctggaggag
cttctcctcgatgccaaccaactcaaagagctaccaaagccttttttcagactactgaac
ctacggaagcttggcttgagtgacaatgagatccagagactcccgcctgaggtggccaac
ttcatgcagctggtggaactggacatctccagaaacgacattcctgagatccccgagagc
attaaattttgtagggccttggagatcgcagacttcagtggaaaccccctctccagattg
ccggatggtttcactcaactgcgagcgctggctcacttggcactcaacgacgtgtcattg
cagacgttgcccaacgacattggaaacttggccaacctggtgacattggagctcagggag
aacctgctgaagtctctgcccacgtcgctctctttcctggtgaaactggaacaactggac
ctgggcagcaatgaactggaagttttgcctgacacccttggtgctctccccaacctgagg
gagctgtggctggaccgtaaccagctgtcctcattaccaccagagctagggaacctccgg
agactggtgtgtctggatgtgtcagagaatcgtctggaggaacttccctcagagctcaac
ggcctcctggctctcactgacctgctgctcacacagaacctgctggaggtcgtcccagac
agcataggttgtctgaaacagctgtctatcctgaaggtggaccagaacagactgacccac
ctgactgattcaataggagagtgtgaaaacctcacagaacttgtcttaacagagaacctt
ttacaatcacttcctcgctcgctgggcaagctgaagaagctgaccaacctgaatgtagac
cgcaaccgtttgggcagcgtgcccaaagagctgggtggctgtgccagcctcaacgttctc
tcattgagggacaaccgcctgggcaaactgcctgctgagcttgcagatgccactgagttg
catgtgctggatgtggctggaaacagattacaaaacttgccttttgccctgacaaacctc
aatctgaaggccatgtggctcgcagagaaccagtcacagccaatgctcaagttccaaaca
gaggatgatgagcgaacaggagagaaggtgctgacctgctatttactgccccagcagcct
tccccaagcctggagaacttgctacagaacagtgtggatgacagctggacagacagcaac
ctgaaccgagtgtcagtcattcagttccaggaagagaccaaggctgaggaggaggatgat
gaggctgctgcagagcgcaggggtcttcagcgcagagccacaccgcaccctagtgagctg
aaggtgatgaagaaggtgattgaggagaggaggaacgaggcttactcatccagaggtgat
ggagaagagtcccctgacccacaggagaagcggttcagtgacctctccaatcagagccat
gactcccaggtctccaacagcacactgtcagccacctcccatgaggacagacaaaatgtg
actgccacctcgcagaaggaggaccttgtggatggacactcccctcaggaggaggaagag
ctggatgaaatggaggtggagtacattgagccaactgtgcactttgcagaggagcctatc
atccgtggtggggatgaggatgacgaggaggacggggaagacggtgagaggagcgatgag
gaggagagaccagtttttcctgcagagaagcagcgtctgatcagaaaggacacaccacat
tacaagaagcacttcaagatcaccaagctgcccaagcctgaggctgtggccgcgctgctg
cagggcttcagtcctgacggcctcaactcttcgactcaggctgctgaggatgagcaggac
gaggacgaagagcagagtatcggcacgcctcagcaccatcgcagactggaggaactggag
gacagtcggcaacaggtcaactccagtcaagtgaagggggtgtcatttgatcaagtcaat
aatctgctgattgaacctgctcgaattgaggaggaagagcacaccctgaccatcctgcga
caaacaggcggcctgggtatcagcattgctggagggaaaggatccacgccttacaaggga
gacgatgagggaatattcatctccagagtatctgaagatggtcctgcggcgagagcaggg
gttaaagtgggagacaaactcctagaggtgaatggagtagacctccacgaagcagaacat
cacacagcagtggaagctctccgtagctccggtgctaccgtttccatgacagtgctacgg
gagcgcatggtggaaccggagaacgccatcaccaccacgccactgaggccagaggatgac
tacttcccacgggagagacgcagcagcggcattgccttcaacatggagacgagtcccagc
gggcctcggcagcggctctccacctgcctgatccgcaacgacaaggggctcgggttcagc
atcgcagggggcaaaggctccacgccgtaccgcacaggagacacgggaatctacatctct
cgcattgcagagggtggagcggcacacagagacagcacgctgcatgtaggcgacagggtg
atctctatcaatggtgtagacatgacagaggccagacatgaccaggcagtagcgctcctt
accggcacctcccccaccatcgccctcctggtggagcgagacctgaatgcaccagggggc
tctccaggtcagtccagggcacgtgcccactcccctccacctccagaaccctcagattct
ccagaccaggaggaggaaggcctttcccttcatgggaaccacctgagtcggatggaagat
gagtaccccatcgaggaagtgatcctggtgaagtcaggtggccctcttggcttgagcatc
gtgggaggcagtgaccatgccagtcacccatttggcatcaatgaacctggggtgttcatc
tcaaaggtgattcctcacggtctggcatgtcaaagcggtctacgcgtcggggaccgaata
ttagaggtgaactccattgacctgcgtcatgccactcaccaggaggctgtgcgagcgctg
ctggctaacaagcaggagattcgtatgttagtacggagggacccttcaccacctgggatg
caggaaattgtcatccagaagcagccaggggagaagcttggcatcagtattcgtggaggg
gccaagggtcatgctggaaatcccttcgaccccacagatgaaggaatcttcatttcaaag
gtgagttcaagcggagcagcagcgagagatggccggctgcaggtcggcatgaggatcctt
gaggtgaacaaccacagcctgctgggaatgacgcacacagaggcagtgcgagtgctccgt
gctgtgggagactctctggtcatgctggtgtgtgacggcttcgatccaaacaaagtggct
gctgtggaggcatctccaggcatcattgccaacccgtttgcaacaggcattgtacgaaag
aacagtatggaaagcatctcttctatagaccgagacctgagcccagaggagatggatatc
atacagaaggaatctgagatggtgagagagacatcgcagtgggaacgagaagagatggag
aaagtggagcgaatgcgcttggagcgtgaggaggcaactcgcctgctagaagaggagact
gagaacattggcactggacctctaaaacttgactacaaaaccctggctgcactgcccacc
accagtctgcagaaggtcaacaggttctctacttctgttactctggctgctcccatggag
gccaccctgcaggcccctttagagcctctgggctttggcttaggtcaccccacaacgccc
ctcagccacatggaccccgagtcctgccccagtctaaacgcagagcacgattatcttcac
ggatcccagttctcccctaatgggacctccagtgctgacagtgctggctcatcaacaacc
attagttcaacatttgtacctgaagaagaagaggaggagtgtctggtggactctcagcct
atctgcttcaaagaaaaccctttcttggtggccaatcgcaaaggcaaaggccttccgcct
ggagagcagctcctgtcagggcctcctgtgggctacgggagacagggccagctgcagccg
tggttgttcagcaaggcgccttcctctgacttcaccaggacggacagcccaatcagggaa
gccccctactctcccactatccaaccgcccagccaccactcttccaacagctccctatgc
gcaggcagggagacccgcttcgcaaacattcattacacctccactcccactgccaaggaa
aacacatcatcatcaacgcgaccgggtgccattcagccagttggccgtgtgcggccaagt
acctcccctgccactccggacggccacagccccaaccccttccagcatggcccctccccc
ttcaactcccagacctctcctcgtgccccctcccccacctcgcccgacgagttccccatg
aatgtcaagcaggcatacaaggcgtttgccgccgtgcctcgctctctggcagtgctggag
ccgccgcaggacctgtatggtgtgaggaacaatttccacccaaagcaaccctctccagag
cctgagttgtacaacgaggtgtttgatgacacagatggtcaggagggagctggcaagggt
ctgaccgacaaggtctccccccggccctccctcgcctctgaccgtcgggagtatatgaac
ctggcagcagtgcctcgcctctccaggccgtcagtggacctgcagagtccttctcctggt
ggtaaggacagcccagagcagcgctctttcagggaccgacagaagtattttgagatcgac
gtgaaacaacagactccagaaaaacccaaacctcgagtctccctcgttggagaggatgac
ctcaagaaaatgcgagaggaagaagcgaggaagtttgagcagcgggcagcggagtatcta
ctggatgaagatgaggaggatgaggaggaggatcttgctaagcaggtggctcagatgaag
gccactggcaaggtgttgctggatggagtggagtataaggtggagccagtatccacccca
tctcagcactgctccacaccaccgagctacaacatcacaccaccgagctactgtggcagc
tcaggaccctcctctgttgatggaaagggagactctcagaggaattcactggaggacagc
ttcaggctggagcagaggcccaactccatgaccggtctgatccctgtgtaccccggggaa
tcagcggctccaatccgtacagccaaagcagagcgtagacatcaggagagacttcgtatg
cagagccccgagctggctgtggcccctgacaaggacttgtcccctgctgagaaacgagct
ctggaggcagagaagagagccatgtggagagcagcacggccctgtggcctagaggaggat
gttaggcagtatgagcaggacctggctaagaggctctaccaggcccgagtgagggcatct
cagggcacggccgcggccccccagccccccacctcttcctctacctcctcctctgcagcc
tcccagctcagaatgaaatctctggagcaggacgcactgaaggctcagatggtcattgcc
aagtctcgggatgggaagaaacgtgggacgctagaccagttgacagagtcgccctcacct
gcccccacaccttctcctacacctatggaagagctcagtcctcgaggagtaacctcacca
ggcaggctgtccctgtcgtcaaagaagtttgactaccgacagtttgctgccattccttct
tccaaacccgtatacgacatccagtcccctgacacagtcgacgacatgaagttcatcgac
gacggctccggcaacccagggcccaccgcaaaccccgaggccgaggttcccaccccactg
ccggccacctcagccctggaggagatggccttgtacagcaacaagcgcaaactgaggcag
ggtcgccgcagcctggaaaccgccgtgcccacgtaa
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