Lates calcarifer (barramundi perch): 108900005
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Entry
108900005 CDS
T04895
Symbol
prpf4bb
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA processing factor 4Bb
KO
K08827
serine/threonine-protein kinase PRP4 [EC:
2.7.11.1
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lcf01001
]
108900005 (prpf4bb)
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108900005 (prpf4bb)
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
108900005 (prpf4bb)
Protein kinases [BR:
lcf01001
]
Serine/threonine kinases: CMGC group
DYRK family [OT]
108900005 (prpf4bb)
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108900005 (prpf4bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
ABC1
Pox_ser-thr_kin
CoV_S1_C
Pkinase_fungal
CSTF_C
Motif
Other DBs
NCBI-GeneID:
108900005
NCBI-ProteinID:
XP_018556301
UniProt:
A0AAJ7QHI0
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All DBs
Position
LG24:16375056..16384053
Genome browser
AA seq
1016 aa
AA seq
DB search
MADVEMDITSRRMNNGNEHVKQDLESHERSGNEDSGDMSEEEEEEEEEAETNGEKTEEGS
KHHSSSGKHKRKKHKHRSKHKKHKHAFDEEKDRKRRHRHKHRKHKRKEGSSPSGAGLFGA
SGNRKVESSPSSGNPSLDDRALLEDLEKQRAMIKAELDSQLMEGKVQSGMGLILQGYNSG
SEEDGDARVRNGEQRQRGSSGKPISPRGGKSGKSRRDSTEGSKSSSKRRSRSKSAEKAAK
ESKQDKVTKSTKDTGAKDRGRGRSRSKDRKRSDSTDRSKERRKSNSPSTWRGEQKSSRTE
KRSSPQRDDRPNQERATRRSRSPVRERPSRSDGDRDKRPAKSPSKDASSGKENRSPHRRP
HSPVRKRSASPRHRDARHPSASAADRASKQSHSPSRTRSSPRRGRSRSPEVRRRDADRQD
SPLRKRPRADVGPGRDRSRENSPRSSSRRRMSRSPLRRRSPSPRRRSRSSPRRRSRSPLR
HRSGERDRYGRLRQYRRSMSRDRERRRRRSRDEDKFKGSLSEGMKVDQESSEEEVLEDFD
GEEIDEEALIEQRRQQRLAIVQKYKVVNEDTNMVSEPSSPQSSTRSRSPSPDDILERVAA
DVKEYERENLNTFEANIKAKHNLIAQEKDGANPKKPSAPDMFTESDDMFAADFDSARMRA
AGVGKDFKENPNLRDNWTDAEGYYRVNIGETLDKRYDVYGYTGQGVFSNVIRARDTARAG
QEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLS
MNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILK
LCDFGSASHVADNDITPYLVSRFYRAPEIIIGKPYDYGIDMWSVGCTLYELYTGKILFPG
SSNNHMIKLAMDLKGKMPNKMIRKGLFKDQHFDQNLNFLYIEVDKVTEREKVTVMSTINP
TKDLLADMIGGQRLPEDQRKKVMQLKDLLDGTLMLDPAKRISINQALQHPFIQEKI
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgttgagatggacatcacgtccagaagaatgaataatggcaacgaacacgtg
aagcaggatctggagagccatgaaagaagtggaaatgaggacagtggagacatgtctgag
gaagaagaggaggaagaggaggaggcagaaactaatggtgagaagaccgaggaagggtcc
aaacatcacagcagcagcggcaaacacaagaggaaaaaacacaagcaccgtagtaagcac
aaaaaacacaaacatgcctttgatgaggaaaaggaccgcaaacgcagacatcgtcataaa
cacaggaaacacaaacgcaaagagggctcctctccctctggtgctggcctctttggtgcc
tccggcaatagaaaagttgagtcctctccctcctctggaaatccaagtctggatgacagg
gcgttgctggaggatttggagaaacagagggccatgatcaaagctgagctggacagccag
ctgatggagggcaaggttcagtccggcatgggtttgatccttcagggttataactctgga
tcagaagaggacggagatgccagggtaagaaatggagaacagcgtcaaagaggcagctca
ggtaaacccatatctcccagagggggaaaaagtgggaaatcaagacgggactcaacagag
ggcagtaagtccagctccaagcgccgtagtcggagtaagtctgcagaaaaggctgctaag
gagtctaagcaggacaaggtgaccaaaagcaccaaggacacaggtgctaaggacagaggc
cgtggcaggagcaggtcaaaagacagaaagcgttcagacagcactgataggtccaaggag
aggaggaagtccaactctccctccacctggagaggagagcagaaaagcagccgcactgaa
aaacgctcctctccacagcgggacgacagaccaaaccaggagagagcaacccgacggtcc
agatcacccgtgcgagagcggccgagtcggtcagatggcgaccgggacaagcggccggcc
aagtctccatccaaggatgcctcgtcagggaaagagaaccgctcccctcacaggcgtcct
cacagccccgtgaggaaacgcagcgcttcacctcgccacagagatgcccgccacccctca
gccagcgccgcagacagggcgtcgaaacagagccactctccatcaagaacaaggtcctcc
cccaggagaggccgcagtcgctcaccagaggtcaggaggagggatgctgacaggcaggac
tcaccactgaggaagcgtccgcgggcagatgtggggccaggcagagacagatcacgagag
aacagtcccagatcttcatcccgccgcaggatgagtcgctcacctctgagacggaggtcc
ccgtcaccacgacgacgctcccgctcttcccctcgcagacggagcaggtctccattgaga
cacaggtctggggagagagaccggtacggtaggctcagacagtacaggcgctcaatgtcc
cgtgatcgggagaggaggagaaggcgcagcagagatgaagacaagttcaagggtagcctt
tcagagggcatgaaggtcgaccaggagtcctcagaggaagaagtgttggaagacttcgat
ggtgaagagatagatgaagaagctcttatcgaacagcgccgtcagcagcgtttggccatc
gtccagaaatacaaggttgtgaacgaggacacaaacatggtgtcagagcccagcagcccc
cagagcagcacacgcagccgttcaccctcaccagacgacatcctggagcgagtggctgca
gatgtcaaggagtatgaacgcgagaacctcaacaccttcgaggccaacatcaaagcaaag
cacaacctcatcgcccaggagaaagacggagccaacccaaagaagccttctgcccctgac
atgtttacagagtcagacgacatgtttgctgctgactttgacagtgccaggatgagagca
gcaggtgttggaaaggacttcaaagagaaccccaacctcagggataactggactgatgct
gagggttactaccgggtgaacattggggagacactggacaagcgctatgatgtgtatggc
tacactggtcagggcgtgttcagcaatgtgatcagggccagggacactgcgagggccggc
caggaggtggcagtcaagatcatccgaaacaacgagctcatgcagaagacgggtttgaaa
gagctggaattcctcaagaagctgaatgacgctgatcctgatgacaagtttcactgcctt
cgccttttcaggcacttctaccacaagcagcatctttgtctggtatttgagcctctcagc
atgaatttacgagaggtgctcaagaagtacggtaaagatgtcgggctccatatcaaggct
gtgcgctcctacagccaacagctgttcttggccctcaagctgctcaaacgatgcaacatc
ctccacgctgacatcaagccagataatatcctggtaaatgagtcaaagaccattctgaag
ttgtgcgattttggttctgcatcccatgttgctgacaacgacatcacaccatacctggtc
agcagattttacagagctccagaaatcatcataggaaaaccatatgactatgggattgac
atgtggtctgtgggctgcactttatacgagctttacactggcaaaatcctgtttcctggt
tcttccaacaatcacatgatcaaactcgctatggacctcaagggcaagatgcccaacaag
atgatccgtaaaggcttgttcaaagaccagcacttcgatcagaatttgaacttcctgtac
attgaagtagacaaagtaacagaaagggagaaggtgacggtgatgagcaccatcaacccc
accaaagacctgctggccgacatgataggaggccagcgactgcccgaggaccagaggaag
aaggtaatgcagctgaaggacctgctggatggcaccctgatgctggacccagccaaacgc
atcagcatcaaccaggctctgcagcacccctttatccaggagaagatttaa
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