Lates calcarifer (barramundi perch): 108900032
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Entry
108900032 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108900032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108900032
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108900032
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
108900032
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
108900032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
108900032
NCBI-ProteinID:
XP_018556348
UniProt:
A0AAJ7QHJ5
LinkDB
All DBs
Position
LG24:16535849..16545982
Genome browser
AA seq
1521 aa
AA seq
DB search
MSKGDKEGFIVKFVESKGQKTEYAVKAYEAILELQSEKHLKTVDEDAVLQMDHKDKSLFV
FSSFTSPAFLHCKKLGCRVVSPLVVLYCLQQQRCVPKAEKPVYNMAMADVTISCTSLEKA
TRAEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLGKPILLPTWVKACWEKS
QDSLFRYTDLPIEDYLCPVLRGCTVCVTGLSSTERKEVQRLCEQHGANYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGFCQDESRYTVERNASKTTRPHTSTPT
GTSKKEEGPSLLGLSHISVNASMTINDTALTNGTISRLEAPDPIDSLDLTTCPADDILDG
CKLYLCGLPGKKLEKLRRLVNAAGGLRFNQPSEELTHVVMGELDPDLKNFVFKVTHRPHV
VTVQWLLDSFTKGSLLPESGYFHPDCPPPAVASVSVSARHTSPSRPSLGPPAASPSTPRQ
KRAEEDLLSQYVDDDPTVVDMPPPATESNSRRSVSTVAEALPEPWAPNQTRGLEQDSTLQ
EASEAGLFVGKCFLLVGFGTEAETQLSQLVTEHGGRVLMGRTRVVADYAVVPLLGCSVEA
TVDEVVTDTWLAMCVEKECVLPLSSNPLFTPVPVLDGRLPLKDCVLSVSQFTGAERESLV
ELAKHLGANVQDYFVRLANQKKGMLASTHLVLQSPEGTKYQAAKKWGLPAVTMRWILESA
RTGQRAEEERFLVDLPPSPERDEESFVGGSQKPTMPPPARMSPEIPLLGLQSGKAVTPLD
LGRFQSKVFRSVLDEMKPKEDISTPKQNQEGGRRNPLQKEPSLQLDTPSRFLSRDQLFRP
SFNVKDALGALETPGGRSKPGERVETPLTDVINRNLKVALANSTRNQVSDMQAVSASPQL
IKTTEKQAPEKETGPLTGVVICVGKKLSKMQSELNAIAASLGADFRWACDDTVTHYIYQG
RVGDNTREYRGVKERGLHVVSQYWLQACAEEQRHVPESLYPFTYNPKMSLNLSQVPSCSQ
KSPPLTRTQLKDITEAKDNKSEHNTTEEATTPRRISDGSVDPEEMNDTTERSDISETLEM
RENLHRQLQEIMSATKLTTGRRTSVRLSRMGSGGADSGPHTPDGSRVGRSSSRRTLEALR
VSREAVMDINTEPSQSEQIVWDDPTAREERARLADNLQWPGSPSQHSETFVPPAPPTAEN
CPPFRDSMTDSELVEMAACDVIDQHMGQKVMTPPSLKKRENDILTPKAPSIAFPLANPPV
APEPQEEQEEEKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPL
RNEKYLAAMAAGKWILHRSYLEACRSVGRFIQEEEYEWGSSSILDALPSITSQQRRLALA
AMRWRRALQGRSEHGGAFSGWTVMLNIDQNRESGFRRLLQSGGARVLPSPSPSLYKETTH
LFADFSRLKPGDFRVDVSEATSQGVTCLKPEYIADYLMQEPTPPTELYNLTEAPPEETPG
TPSRKRKAAADTSRLKKSRLN
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggagacaaggaaggcttcattgtgaagtttgtggaaagtaaaggacaaaaa
acagaatatgctgtcaaggcttatgaggccattttggagctgcagtctgagaaacacttg
aagactgtcgatgaggatgcagttttacagatggaccataaggacaagtctctttttgtg
ttcagcagcttcacctctccagcctttctgcactgcaagaagcttggctgccgagtcgtg
agtccactggtggtattgtactgcctgcagcagcagcgttgtgtccccaaagcagagaag
cccgtctataacatggccatggctgacgtcactatttcttgcaccagcctggagaaagca
acacgggcagaggtgatggacctggtgcaactcatggggggacgggtctatcttgaccta
aatgtatccgtcacgcacctgatagcaggagaggttggcagcaagaaatacctggtggct
gccagcctgggtaaacccatcctgctacccacatgggtcaaagcctgctgggagaaatct
caggacagtcttttcaggtatacagatctacccattgaagactatctgtgtcctgtgttg
cgtggctgtactgtgtgtgtgactggcctctctagcacagagcgcaaagaagtgcagcgg
ctctgtgagcagcatggagccaactacactggtcagctcaaaatgaatgagtgtacacac
ctcatcgttagtgaaccaacaggtcagaagtacgagtgtgctcggaagtggaacgtgtat
tgtgtgtctttgcactggctgtttgacagcatagagaagggcttttgtcaggatgagagc
aggtacactgtggagcgcaatgcatcgaagaccactcgaccgcacacatctacccctaca
ggcaccagcaagaaggaggagggtccatctctgttgggcttgagccacatctctgtcaat
gctagcatgacaataaatgacacagccctcaccaatggcaccatcagccgcctggaggct
ccagaccctatagatagcctggacctcaccacctgtccagctgatgatatactggatggc
tgcaagctatatctgtgtggcctcccagggaagaaactggagaagctgcggcgtcttgtg
aacgctgcaggaggtctgcgcttcaaccagcccagcgaggagctcacacatgtggtcatg
ggagagctggatccggacctcaagaactttgtctttaaagtgactcataggccccatgta
gtgacagtgcagtggctgctggacagtttcaccaaaggcagtttactcccagaatcaggc
tacttccaccctgactgtccgcccccagctgtggcctctgtttctgtgtcggcccgtcat
acttccccctccagaccctcacttggtccccctgcggccagtcctagcactccccggcaa
aagagagcagaagaggatctgctttcacagtacgtggatgatgacccaacagtagttgac
atgccaccaccagcaacagagagcaacagcaggaggtcagtgagtacagttgcagaggct
ctgcctgaaccctgggcaccaaaccagaccagaggactagagcaggactcaaccctgcag
gaggccagcgaggcagggctttttgtcgggaaatgtttccttcttgtgggctttggcact
gaggcagaaacccagctctctcagctggtgacagaacacggaggcagggtgctgatgggt
cgtacacgggttgtggctgactacgccgtggtgccactgttgggctgttcagtggaggcc
acagtggatgaggtggtcactgatacctggctggccatgtgtgtggagaaggagtgtgtt
ctgccgctttcctccaaccctttgttcacccctgttcctgtgttggatggacgtttacct
ctcaaggattgcgttctctctgtcagtcagttcactggagcagagagagagtctttggtg
gagctggccaagcaccttggagccaatgttcaggattactttgtgcgcctggccaaccag
aagaaagggatgctggccagcactcatctggtattgcagagccccgaaggcacaaaatac
caggcagcaaagaaatggggacttcctgctgtcaccatgcgctggatactagagtctgcc
aggactggccagagagcagaagaggaacgattcctggttgacctgccaccttcaccagag
agggatgaagagagttttgtcggtggttctcagaagccgaccatgcctcctccagctcgg
atgtctccagagatccctttgctaggtctgcagagcggaaaggccgttaccccgctggat
ttaggtcgctttcagagcaaagtgtttcgctctgttttggatgagatgaagcccaaagaa
gacatcagcacccccaaacaaaaccaggagggtggaagaagaaacccccttcaaaaggag
ccctccttgcagctggacactccctcccgtttcctcagcagagaccagctcttcaggccc
tcttttaatgtcaaggatgcacttggagctttggagactccaggtgggagatccaagcca
ggagagagggtggagactccactgactgatgtcatcaacaggaacctgaaggttgctctg
gctaatagcacccgcaatcaagtctcagatatgcaagcagtctcagctagcccccagctt
attaaaaccactgagaagcaggctccagaaaaagaaactggtcccctgacaggcgttgtt
atttgtgtgggaaagaagctgagcaaaatgcagagtgaactaaatgctattgctgcctcg
cttggagccgacttcaggtgggcttgtgatgatacagtgacacactacatctaccaggga
cgtgtgggggacaacacccgggaatacagaggagtgaaggagagaggactgcatgtggtc
tctcagtactggctgcaggcttgtgctgaggagcagaggcatgtcccagagtcactgtat
cctttcacctacaaccccaagatgagcctaaacctgagccaggtgcccagctgctctcag
aaatctccacctttaacacgaacacaactcaaagacatcactgaggcaaaggacaacaaa
tctgagcacaataccacagaggaagctacaaccccacgtcgtataagtgatggaagtgtg
gatccagaggagatgaatgatactacagaaaggagtgacatttcagagactctggagatg
agagagaacttgcatagacagctccaggagatcatgtcagccactaagctgacgacaggg
aggcgtacctcagtcagactcagcaggatggggtctggaggtgccgattcagggccccac
acacctgacgggagccgagttggacgtagcagtagcagacgtactctagaagctctgaga
gtctccagagaagcagtcatggacataaacacagagccatcccagagtgagcagatagtt
tgggatgaccctacagccagggaggagagggccaggctggctgacaatttacagtggcct
ggcagtccctcacagcattcagagaccttcgtaccaccagctccccccactgcagaaaac
tgccccccgttcagggactccatgacagactctgagctggtggagatggccgcttgtgat
gtcattgaccagcacatgggtcagaaagtcatgactcctccatcactgaaaaagagggaa
aatgacatcctcactcctaaagcccccagcatcgcctttcctctcgccaaccccccagta
gcaccagagccacaggaggaacaagaggaagaaaagcagccacccagatttcagctatcc
tccctcagccctcaggaacgcattgattacagtcacctcatagaggagcttggtggtgta
gtcctggacaagcagtcttttgaccccagctgctcccacatcatcgtagggactcctctg
cgcaacgagaagtacctggcagcgatggcagctggcaaatggatcctgcaccgctcgtat
ctggaggcctgccgatctgtgggtcgcttcatccaggaggaggagtatgagtggggcagt
agctccatcctggatgcattgccctccatcacctcccaacagaggagactggcattggct
gccatgcgctggaggagagccctacagggacgctctgaacacgggggtgccttcagtgga
tggacagtcatgctgaacatcgaccagaacagagaatcaggctttaggcggttactgcag
tctggtggagcgagggtcctgcccagcccctccccatccttatacaaagaaaccactcac
ctgtttgcagacttcagtcggctgaagcctggagacttcagagtcgatgtatcagaggcc
acctcccaaggagtcacctgcttgaagccagagtacatcgcagactacctcatgcaggag
ccaactccacccactgagctctataacctgacagaggctccccccgaagaaactccaggc
actccgtcacgtaaacgtaaagcagcagccgacacctccaggctgaaaaagagccgtttg
aactga
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integrated database retrieval system
