Lates calcarifer (barramundi perch): 108900130
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Entry
108900130 CDS
T04895
Name
(RefSeq) high affinity choline transporter 1
KO
K14387
solute carrier family 5 (high affinity choline transporter), member 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108900130
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108900130
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC5: Sodium glucose cotransporter
108900130
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Motif
Pfam:
SSF
Motif
Other DBs
NCBI-GeneID:
108900130
NCBI-ProteinID:
XP_018556504
UniProt:
A0A4W6DE28
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Position
LG5:complement(26064378..26085612)
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AA seq
553 aa
AA seq
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MALNVPGLVVMAAFYLLILGTGIWASMRSKREEKKCTGDGMEITLLAGRNINLLVGIFTL
TATWVGGGFILGIAEATYNPTLGAVWALMPVPYVLTFFLGGFFFAKPMRENKYVTMMDPF
QQKYGNVLSSALIFPALVADVLWVARTLVSLGGTMSVILDLSYVYSIIISSVVAIIYTLL
GGLYSVAYTDVIQLILIFVSLWVCVPFLLTNPHSVDISLTAYNQTFQAPWVGMVELDEAG
KWFDDFMLLALGGLAYQAFYQRILSASSYTQAQVTCFASSAFCLVLGIPSVLVGAVAAST
DWNSTSYGLPTPYERDQAGSILPIALQYLTPPYISVIGIGAVAAAVMSSMDSALLSSASL
FSSNIYKNIIRKQASDREMQWVIRISVVVVGLAGTALTFLDSSVLVFWLVGVDMSYTIMF
PQLVCILFFKVSNGYGATVGYMMGIIMRVLSGEPLIGLPPAIKFPGCRLDAEGKLTQFFP
FRTAIMIISLLSILLFSWLTSIIFNKGLLSEKWDVFKIKRKQKPAARAMDDKGTNPDNEE
ASAAKQLLDTTSC
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggctctcaatgtgccaggtctggtggtgatggcagcgttctacctgctgatcttgggc
acgggcatctgggcgtccatgcgctccaagagggaggagaagaaatgcactggggacggc
atggagataacactactggccggtcgcaacatcaacttgctagtcggcatcttcactctt
actgctacatgggtgggtggaggtttcatccttggtatagctgaggcaacatacaaccca
acactgggtgcagtgtgggctctcatgcctgtgccttacgtcctgaccttcttcttaggt
ggctttttctttgccaagcccatgagggagaacaagtacgtgacaatgatggaccccttc
cagcagaagtatgggaacgtcctgagcagtgcactgatctttcctgcactggtggccgat
gtcctgtgggtggcacgcacacttgtcagcctgggtggaactatgagtgtgatcctggat
ctgtcctacgtctactccatcatcatatcctcagtggtggccataatctacacactgctg
gggggactctattctgtggcctacacagatgtcatccagctcatcctcatctttgtcagc
ctgtgggtgtgtgttcctttcctgttgaccaaccctcactcagtggacatctcactgaca
gcctacaaccagaccttccaggctccctgggtcggcatggtggagcttgatgaggctggc
aagtggtttgacgacttcatgttgctggctctcggggggttggcctaccaggcattctac
caaagaatcctgtccgcttcatcttacacccaagctcaagtgacctgcttcgcctcctca
gccttctgcctggtgctgggtatcccctctgtgctggtgggagctgtggctgcatctaca
gactggaactcaaccagctatggattgcccaccccatacgagcgtgaccaggcaggctcc
atcctccccatcgccctgcagtacctcacgcctccatacatctctgtcatcggcatcgga
gctgtagctgctgctgtcatgtcctccatggactcagctcttctgtcctctgcctcattg
ttctcctcaaacatttacaagaacatcatcaggaagcaggcatcagaccgtgagatgcag
tgggtgatccgtatctcagtggtggtggtgggtctggctggcactgccctcaccttcctg
gacagcagtgtcctggtcttctggctcgtgggtgtggacatgtcttacacaatcatgttc
cctcagctagtctgcatcctcttcttcaaggtgtcaaacgggtatggagccacagtgggc
tacatgatgggaatcatcatgagggtcctgagtggcgagcccctcattggcctgccgccc
gccatcaagttcccaggttgccggctggacgcagagggaaagctaacccagttcttcccc
ttccgcaccgccatcatgatcatctcacttttgtccattctgcttttctcctggttgaca
tccattatttttaacaagggcctgctgtccgagaagtgggatgtgtttaagatcaaacgc
aagcagaaaccggcagccagagccatggacgacaaggggaccaaccctgacaacgaagaa
gcctctgctgccaagcagctactggacaccaccagctgctga
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