Lates calcarifer (barramundi perch): 108900190
Help
Entry
108900190 CDS
T04895
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108900190
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108900190
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Major cadherins
108900190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_CELSR2_9th
DUF2254
Cytomega_TRL10
Motif
Other DBs
NCBI-GeneID:
108900190
NCBI-ProteinID:
XP_050927270
UniProt:
A0AAJ8B6G8
LinkDB
All DBs
Position
LG6:complement(18882852..19130297)
Genome browser
AA seq
933 aa
AA seq
DB search
MRTDFALVLTAALLLDTFWRNNGEHVSKGPCRPGFSQSFYSVLISRDVLQGQGILKDTTV
SSQKVKFDNCMGNEAVVFRSSDPVFSVRTDGSIFAQGEGASLDEPVQFKLTASGPHTHVW
ETVVQLALIDPPSPQQNENEVMMEDGKVAEGKERKDVFQAPPPVIMFSGSGLNSSKGLRR
QKRDWVIPPINVAENSRGPFPQMLVSIRSDQDQDISIRYSITGVGADQPPNEVFNIDPVL
GKMFVTKPLDREHRSSYHLRAHAVDMNGNQVENPIDLYIFVIDMNDNRPEFKNQVYNGSV
DEGSKPGTYVMHLSAFDADDNTTANGMVRYRILSQTPHSPIPNMFTINSETGDIVTVAPG
LDREKVSQYTIIVQATDMEGNLNFGLSNTATAIITVTDINDNPPMLTSRTFSGEVPENRV
DVVVANLTVIDADQAHSPNWNAIYQIISGDQFGHFTIRTDPVTNDGMVTVVKPVDFEMNR
SFMLKVAVSNQAHLASGIQSSLQSTADVTISVQDVNEPPYFPTNPKHIRFEEGVPAGTSL
TTFSASDPDRLHMQSIRYSKLNDPADWLSINRTNGQIVTTGMLDRESIYVKNNIYEATFL
ATDNGSPAASGTGTLQIYLIDINDNPPALIPKESQICERMNKNVNGVNITAADADTDPNA
GPFVFELPNFPTSIRRNWTISRISGDYARLGLRYQVYLEPGVYEVPIIVSDSGNPPLSNR
SVIKVKVCPCDENGDCTTLGAVAAAGLGTGAIISILICVIILLSMVLLFVVWIKRREKER
QTKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDSLEHIISKPPGVRRVDERP
IIPESQYPIRPVVPHPGDIGDFIHEGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSL
NSSSTGDQDYDYLNDWGPRFKKLADMYGGGDDD
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgagaactgacttcgctctggtcctgacagcagcccttcttcttgacacattctggagg
aataatggggagcatgtttccaaaggtccctgccgacctggcttctcacaaagcttctac
tctgtgctgatttcaagggatgtactgcaaggccagggcatacttaaagataccacagta
tcatcacaaaaagtgaagttcgacaactgcatgggtaacgaagcggtggttttccggagc
agcgacccagtcttcagcgtgcggacagatgggtccatctttgcccagggagagggagcc
agcctagatgaaccggttcagtttaaactgacagcaagtggtccacacacacatgtctgg
gagactgtggtccaactggcactgattgacccaccatcacctcaacaaaatgaaaatgag
gtcatgatggaagatggaaaagtcgctgagggaaaagagaggaaggacgttttccaagca
ccgcctcctgtcatcatgttctcagggtctggcctgaacagctccaagggtctacggagg
cagaagagggactgggtgatcccaccaatcaacgtggcagaaaattctcgaggaccgttc
cctcagatgctcgtcagcattcgttcagaccaggaccaggacatctcaatccgatacagc
atcactggggtgggagcggatcaacctcctaatgaggtgttcaatatcgaccctgtgctt
ggaaagatgttcgtcacaaaacctcttgatcgagaacatcgctcctcataccatttgcgt
gcccatgccgtggacatgaatgggaaccaggtggagaaccccatcgatctatacatcttc
gtcatcgacatgaatgacaacaggcccgagttcaaaaaccaggtctacaatggctctgtg
gatgaaggctccaaaccaggaacatatgtgatgcacctgtcagcgttcgatgccgacgac
aacaccaccgctaatggaatggtgcgctatcgaatcctgtcccagacgccgcacagcccc
atccctaacatgttcaccatcaacagcgagaccggcgacattgtgacggtggcacctggt
cttgatcgagagaaagtgtcccagtataccatcatcgtgcaagccacggacatggagggc
aacctcaacttcggcctatccaacacagccaccgccatcatcactgtcacggacatcaat
gacaatcctccaatgctgacctccagaactttttctggtgaagtcccagagaaccgagtg
gatgttgtggtggctaatctgacggtgatcgacgctgaccaagctcattcgcctaactgg
aacgccatctatcagatcatcagcggagaccagttcgggcacttcaccatccgcactgac
cctgtcaccaatgatggcatggtcaccgtagttaagccagtagactttgagatgaaccgt
tccttcatgctgaaggtggcggtgtccaaccaggcccacctggccagtggcatccagtct
tcactacagtccacagctgacgtcaccatatctgtccaggacgtcaatgagcccccttac
ttccccacaaacccaaaacacatccgctttgaggagggagtccctgccggcaccagcctg
acgaccttctccgcctcagatcccgaccgactgcatatgcagtcaatcaggtattcaaag
ctgaacgaccctgctgactggttgtccatcaacagaaccaacggtcagattgtaaccaca
ggcatgcttgaccgagagtccatctatgtcaaaaacaacatatatgaggccacattcctg
gcaacagacaatggctctcctgcagccagcggcacaggcacgttgcagatctatctgata
gatattaatgacaacccgccggcgctcatacccaaggagtctcagatctgtgagaggatg
aacaagaacgtcaacggtgtcaacatcactgccgctgatgccgacacggaccccaacgct
ggaccctttgtcttcgagctccccaacttccccaccagcatccgacgcaactggactatt
tctcggatcagtggcgactatgcccgtctgggtttgcggtaccaggtatatttggagcca
ggcgtgtacgaggtccctataatcgtgtcagactcggggaaccctccattgtccaacagg
tcggttatcaaagtaaaggtgtgtccctgcgacgaaaatggagactgcaccactctcggg
gccgtggcagccgctggcctgggaaccggagccatcatctccatcctgatctgcgtcatc
atactgctcagcatggtgctgttgtttgtggtgtggatcaagcgcagagagaaggagagg
caaacaaagcagctgctcattgaccctgaagatgatgtcagagacaacatcctcaaatat
gacgaagagggaggaggagaggaggaccaggactatgacctgagccagctgcagcagccc
gactccttggagcacatcatcagcaagccccctggtgtccgcagggtggatgagcgtccc
atcatccccgagtcccagtacccaattagacctgttgtgccccatcctggagacatcggg
gacttcatccacgagggtctgcgagcagcagacaatgaccccactgctcctccttatgac
tccctgctggtgtttgactatgagggcagcggctccaccgctggctctgtcagctcgctt
aactcctccagcacgggggaccaggactatgactacctcaacgactggggcccacgcttc
aagaagctggccgacatgtacggaggaggggatgatgattaa
DBGET
integrated database retrieval system