Lates calcarifer (barramundi perch): 108900201
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Entry
108900201 CDS
T04895
Name
(RefSeq) calcium-responsive transactivator isoform X1
KO
K15623
protein SSXT
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108900201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108900201
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108900201
GBAF(ncBAF) complex
108900201
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
108900201
NCBI-ProteinID:
XP_018556639
UniProt:
A0A4W6EVV1
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Position
LG6:complement(18838110..18846666)
Genome browser
AA seq
415 aa
AA seq
DB search
MSVAFSSARPRSKGEVTQQTIQKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVY
LATIADSNQNMQSLLPAPPTPSMSMGPGGMGQSGGHAPNNLNDNMAPGLPPTSMIQSQMS
NGPSHAPMQQQSGQVQSAIPSTSLSLPASSYNSSASAPGYSHAAPSSQGSMIQGPGPGYG
SSSSSTSSSSSSSSRSNLNMQSNQVSMMHQQSAAPHYSSAQAGGQHYQGQQAMGMMAQGS
QGNSMMSQRPIGSYRSSQQGSAQQYMGQDEFYGEQYGHTQSSSEPINQQYYPDGHGEYSY
QQSSYGDQGYDRSFDESSQHYYEGGNSQYSQQQAQYPQSSGQQQPFSQQQYSSQQGYSSQ
PQGYGPGQGGSSQYSQYQQGQSQQYGSYRSTQGGPGAQTQRPYAYEQGQYGNYQQ
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggcattttcatcggcgcgccccaggagtaaaggggaggtgacacagcaaacg
attcaaaagatgcttgatgaaaatcatcatttaatacaatgtataatggattaccaaagc
aaaggaaagacagccgaatgcacacagtatcagcagatcctgcacagaaatcttgtttac
ttggccacaatagcagattcaaatcagaacatgcagtcactactacctgcgcctcccact
cccagtatgtcaatgggtcctggagggatgggtcagagtgggggacatgctccaaacaac
ctcaatgacaacatggcaccgggactgccccccacatccatgattcagagccaaatgagc
aatggccccagccatgcccccatgcagcagcagtctggtcaggtgcagtcggcaattccc
tccacatccctcagcctgccggccagcagctacaacagctcggcctcagcccccggctac
agccatgctgcaccttcctcccagggcagcatgatccagggccctggtcctggctatggc
tcttcctcctcttccacatcctcatcctcctcttcctcctcccgcagcaacctcaacatg
cagtccaaccaagtctccatgatgcaccaacaatctgccgctccgcactactcttcagcc
caggctgggggccaacactatcagggacagcaggccatgggcatgatggctcagggcagt
caaggaaatagcatgatgtctcagaggcccattggatcctaccgctcctcacagcaagga
tctgcacagcagtacatgggacaagacgagttctacggagagcagtatggacacactcag
agctccagcgagcccataaaccagcagtattaccccgatggtcacggggagtactcttat
cagcagtcctcatatggtgaccaaggctacgacaggtcctttgatgaatcttcacagcat
tactatgaaggaggtaactcacagtacagtcaacagcaggcccagtatccacagagctct
ggccagcagcagcccttcagccagcagcagtactcctctcaacaaggctacagcagtcag
ccacagggatacggacctggccagggtggatcctctcagtattctcagtatcaacagggt
caaagccaacagtatggctcctaccgctccacccagggaggccctggagcacagacgcag
aggccctatgcctatgaacagggtcagtatggaaattatcagcaataa
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