Lates calcarifer (barramundi perch): 108900210
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Entry
108900210 CDS
T04895
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108900210 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108900210 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108900210 (col2a1a)
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108900210 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Amnionless
Motif
Other DBs
NCBI-GeneID:
108900210
NCBI-ProteinID:
XP_018556667
UniProt:
A0AAJ7QHZ6
LinkDB
All DBs
Position
LG6:19746088..19770323
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPLIPSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG
PKGPPGPMGPPGEQGPRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLGG
NFAAQMASGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGPAG
PMGPRGPPGPSGKPGSDGEAGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGEAGAPGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAG
PQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGAKGSTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGAGGPPGPAGPAGERGEQG
QPGPSGFQGLPGPSGAPGEAGKPGDQGVPGEAGAPGAIGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPAGAAGPQGPPGLQGMPGERGTGGIPGPKGDRGDNGQKGPEG
APGKDGARGLTGPIGPPGPSGPNGAKGETGPSGPSGAPGARGAPGDRGEVGPPGPAGFAG
PPGADGQPGAKGELGETGQKGEAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGSAGPAGPAGKDGPKGARGDAGPPGRQGDTGLRGPPGQQGEKG
EPGEDGQPGPDGPAGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGGTGSAGDRG
PPGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGAVGTKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGAQGPAGPPGSAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTG
LQGLPGPPGPAGDSGAAGPAGPSGAKGPPGPAGPAGKDGSNGLPGPIGPPGPRGRSGETG
PAGPPGNTGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDS
TLKSLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNM
ETGETCVYPSIAKVPKKNWWSSKSKDRKHIWFGETMNGGFHFSYAQDGPAANAASVQLTF
LRLLSTEASQNLTYHCKNSVAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKKHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaagcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgtatctgtgtgtgc
gacagcggagcagttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctctcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagaccattggtgctaagggccaaaaaggtgaaccaggagagattgcagatgttgtagga
ccaaaaggaccacctggccctatgggccccccaggtgaacagggaccacgtggagaagct
ggcgctaaaggtgataagggaaatcctggacctcgaggaagagatggtgagcctggcacc
cctggaaaccctggcccagctggcccacctggaccacctggaccaccaggtcttggaggg
aactttgctgctcagatggcttcaggttttgatgagaaggctggaggcgctcagatgggt
gtgatgcaaggaccaatgggtcctatgggtcctcgtgggccccctggaccttctggagct
cctggaccacagggtttccaaggtgctcctggagaggctggagagcctggtccagctgga
ccaatgggacctcgtggaccacctggaccttctggaaaaccaggaagtgatggtgaggct
ggaaaacctggaaaatctggtgagcgtggacctgcagggcctcagggagctcgtggattc
cctggaactcctggacttcctggaatcaaaggacacagaggtcatccaggtctggatgga
gctaagggagagactggtgctgcaggagccaagggtgaggctggtgcccctggtgagaac
ggtgccccgggacccatgggcccccgtggtctgcctggtgagagaggacgtcctggagct
gctggagctgcaggtgcccgtggaaatgatggcttgcctggtcctgctggtccacccggg
cctgttggtcctgctggagctcccggtttcccaggatccccaggagccaagggagaggcc
ggacctactggtgctcgtggagctgagggcgcacagggaccacgtggagaggctggtacc
ccaggatctcccggacccgccggagcatcgggtaaccccggtactgatggtattcctgga
gctaagggatctgctggtgctcccggtattgctggtgctcctggattccccggcccccgt
ggcccacctggaccacagggagctaccggacctctggggccaaagggacagtctggagac
cctggtcttcctggattcaaaggtgaagctggacccaagggagagcttggccccgctggt
cctcaaggtgcccctggccctgctggtgaagaaggaaagagaggtgccagaggagagccg
ggagctgctggaccacttggacctccaggagagagaggagctccaggtaaccgtggtttc
cctggtcaggatggtcttgctggtgctaagggtgcccccggtgaccgtggtgttcctggt
gctgctggggctaaaggtagtactggagacccaggacgtacaggagagcctggcctcccc
ggagccagaggtcttactggtcgtcccggagatgctggtcctcaaggcaaagttggaccc
tctggtgcccctggtgaggacggtcgccccggcccacctggtcctcagggagcccgcgga
cagccaggagtgatgggattccctggaccaaagggagccaatggtgaacctggaaagcca
ggagagaagggtcttgtgggtcgtcctggtctgagaggtctgcctggaaaagatggtgag
actggtgctggtggacctcctggccctgctggacctgctggagagagaggagagcaagga
cagcctggaccttctggcttccagggtctgcctggaccatctggtgccccaggagaggct
ggaaaacctggagaccagggtgttcctggagaggccggagctcctggtgctattggacct
agaggtgagcgtggtttccctggtgagaggggtggtgctggacctcagggtcttcaggga
ccacgtggacttcctggaacacctggaactgatggacccaagggagctattggaccagct
ggtgctgctggaccccagggaccccccggcctgcagggtatgcccggagagagaggaact
ggtggcatcccaggacctaagggagacagaggtgacaatggacagaagggacctgagggt
gctcctggaaaggacggtgcaagaggtctgactggtcccattggtcctcctggcccatct
ggacccaacggtgccaagggtgagactggacctagcggacctagtggcgcccctggtgct
cgcggtgctcctggtgaccgtggtgaggtcggtcctcctggacctgctggctttgctgga
cctcctggtgcagatggtcagcctggtgccaaaggagagcttggtgagactggacagaag
ggagaggcaggttctcctggacctcagggaccatctggggctcctggacctgtgggacct
actggtgtatctggacccaaaggagctcgtggtgctcagggagctcctggtgccactggt
ttccctggtgctgcaggcagagttggacctcccggccctaatggtaaccctggctctgct
ggtcccgccggtcccgctggtaaagatggaccaaagggtgctcgtggtgatgccggcccc
ccaggaagacagggagacactgggcttcgtggacctcccggccaacaaggagagaaggga
gagcctggagaggatggacaacctggtcctgatggacctgcaggtcctcaaggtctggct
ggatcccgtggtattgttggtttgcctggtcagcgtggagagagaggcttccctggtctg
cctggaccttctggagaacctggtaaacagggaggtactggttctgctggcgaccgcgga
cctcctggacctgttggaccccctggacttactggacctgctggagagcccggtagagag
ggcacccctggatcagatggacctcctggtcgggacggagctgttggaaccaagggagag
cgaggtaacactggtcctgctggcgcccccggagctcctggtgcccctggtgcacccggg
cctgtcggaccccttggaaagcagggagacagaggagaggctggcgctcaaggacctgca
ggacctcctggatctgctggtgctagaggaatggctggaccccaaggcccacgtggagac
aagggagaggctggagagactggagagaggggacagaagggtcaccgtggcttcactggt
ctgcagggtcttcctggacctcctggtcccgctggagattccggagctgctggacctgca
ggaccaagcggcgctaagggtccccctggaccagctggacctgctggcaaagacggatct
aatggactgcccggccctattggaccccctggacctcgtggacgctctggagaaactggt
cctgctggtcctcctggtaacaccggaccccctggtcctcctggtcctcctggccctggc
atcgacatgtctgccttcgccggtctgggtcagaccgagaagtcccccgatcctcttagg
tatatgagggccgatgaggcctccagctccctgaggcagcacgacgtcgaggtcgactcc
acactcaagtccctcaacaaccagattgagaacctgcgcagccccgacggctcccagaag
aaccctgctcgcacctgcagagacctgaaactgtgccaccctgagtggaagagcggtgac
tactgggttgatcccaacattggcagcacagctgacgccatcaaggtcttctgcaacatg
gagaccggagagacctgcgtctacccaagcattgccaaggtaccaaagaagaactggtgg
agcagcaagagcaaggaccgcaaacacatctggttcggagagaccatgaacggaggattc
cacttcagctatgcacaggacggccccgctgccaacgctgccagcgtccagctgaccttc
ttgaggcttctgtccactgaggcgtcccagaacctcacttaccactgcaagaacagcgtt
gcctacatggaccagaccacaggcaacctgaagaaggctttgctgctgcagggctccaac
gacgtggagatccgcgcagagggcaacagtcgcttcacatacagcgtgttggaggatggc
tgcaagaaacacacaggccggtggggaaagactgtctttgagtacaaaacacagaagacc
tcccgtctgccaatcgtggacattgctcctatggacatcggaggagcggatcaggagttt
ggcgtggatgtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
