Lates calcarifer (barramundi perch): 108900273
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Entry
108900273 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108900273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108900273
03021 Transcription machinery [BR:
lcf03021
]
108900273
03036 Chromosome and associated proteins [BR:
lcf03036
]
108900273
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
ARID
108900273
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108900273
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108900273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
108900273
NCBI-ProteinID:
XP_018556767
UniProt:
A0AAJ7QI73
LinkDB
All DBs
Position
LG3:3379524..3429911
Genome browser
AA seq
2314 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPQEESVPGEKQHENKEPGPDGGSPGQKELQDGTDA
GNAGGGGDSDMKNGNGNLPRVNNNSSNQNDAGGPEGNNHPGMGHHHPGTFPPPPYGYNQH
YSRAPFHQHGGQQSPGMAAASGPGMMDPYPPNSHEHGYPNHYNNYSPFQNRTSYQGQGYG
AMNSPRNNQPPAAGGQPGKQQPAGGTTAMAASYNNQRYNMGNQQPTSTPTLNQLLTSPSS
TRSYPNYPQGDYNNQEGANKGPGDMGSSQYGGVHPGWQQRTHHPPPMSPGNTGQPPNRNQ
PPSPMEQVGKMRSQPYGGPNPYSQQQQGPPTGPGPQQGGSYPGQGYGPPGPQRYPMGMQS
RTPGSMGSMQYGQQISSYGQQGPGGYSQQSQGYYGQHGPPPHPGQQQPPYPGQPQGSSGP
PYPQQGHPAQPPGQHGQPGPPYQQSQGPHGPPPGQPPYSQPSQPQPGQPPYVPPQQQQQQ
PQQQQGPGPQSQQGPPGQPGYPQPPGPGQPPPQQTPQQQQGPPQPQQQQQQQQQQQPQPG
GPPPQAQQPPGHGQQGQPSPYSQTPPLQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQ
QSPYQRFPPPPQELSQDSFSSQSSAPPSNQPMASNKSSQEDSMQARPSSLPDLSGSIDDL
PTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVTPS
RTGPLSPAAVPGNQMPPRPPSVQSDSIMHSSMNQSAMGQDRVYMRNPQMPPYGSPGQPGS
ALSPRQSSGGQMHGGMGPYPQNNSMGNYGPQGGQYGPQGYPRQPGYTGMPNANYPSGPGM
GGSMNPMPGQGSGAPYGSMPPGRIGPGQMGARPYGPGMASNMGAMPPQVASGMCPPPGMN
RKDGGPSMHHGPTNSIHNRPPGYPNMSQGMMGTGSPYGPGMNSMHGMMNQAGPGPYPMGA
NMANNTPGMAPSTEFAMDKMNPAQKMNNKVDGTPKPESKKKSSSSTITNEKITRLYELGP
EPERKMWVDRYLAFAEEKAMGMNNLPAVGRKPLDLFRLYVSVKEIGGLTQVNKNKKWREL
ATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDFFNTDTKKNQPKIQPPSPAG
SGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHTQMPPMPGVRSSVNLQDPFADGGDPAF
SRRNAMTPNSQGYQPGMGGPEMMGRMGPYESNKDPFGGMRKAGEQFMPPGPNSGMGEQYN
RGPPGPMGNMQMGQRQQYPYGYDRRQEPGMGPDGSMGPGAPQPNMMPSGADTGMYSPSRP
PPQQRHESYTNQYPGQGAPPGGPYPNQQPGMYPQQQPNYKRPVDGGYGPPAKRHEGEMYN
VPYSGQQQPGPQSSGPQGQQDMYNQYNAYPGGERRPPGPQNQFPFPFGRERGPSTAGPNS
QSPMPPQMMASPMPSGPDGPQGPMWQGRTEMGYPNYPNRQGPPVPGQGPGYHGMNRSEEM
MPSDQRMNHEGQWPGHVNQRQPPFGPGGSGPPMTRPLPSTYQTSQNHIPQVSSPAPMPRP
MESRTSPSKSPYMHPGIKVQKAGPPVPASHIGQAPVPQPMIRRDVAFPPGSIEASQPHLK
PRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISTFNLCQLPGFLE
LVVEYFRRCLIEIFGILKEYEVGDPGQRTLIDPNAAEDSDDEIPMPDGEDMDTDEEDEED
EEVEESKTNPDTTLTVQVKQEEESSQKDKSSEDEEEEKERESFIKEPNTSTSGSSLDPNL
HSEKLKQASKFDKLPIKVVRKKNPFLVNHSSKLGQRQSFDSGLIHWSIGGGDTTEHIQTH
FESRMDLLKQRKHKPTATENRKKVQVLETATENPEKSKSNGEDKPRQQPPQSSEPQKSPA
EKTSPPLPIGAPVTATIDDVLSARPGSVTEEVVRGGAEEQKENGKYLFSINPDLQSRRNI
KILEDEPHSKDETPLSTLSDWQDSLARRCICISNIVRSLSFVPGNDLEMSKHPGLLLLLG
RLVLLHHRHPERKQAPVTYEKEEEEDEGVSCERDEWWWDCLEVLRENCLVTLANISGQLD
LSIYPESICLPLLDGLLHWAVCPSAEALDPFPTLGPHGSLSPQRLVLETLSKLSIQDNNV
DLILATPPFSRLEKLYGSLVRLVGERKVAVCREMAVVLLANLAQGDSLAARAIAVQKGSV
GNLLGFLEDSLAATQYQQSQSSLLQMQGGPQFEPTSVDMMRRAARALHALAKVEENHSEF
TLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6945 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgtcgccactctcaacactagcccgccatccgaactcaaa
aagccggatcgggacccacaggaggagtcggtaccgggagagaaacaacatgaaaataag
gaaccgggacctgacggcggatctcctggtcagaaggagctgcaggacgggaccgatgct
ggaaatgctgggggaggaggggattctgacatgaagaacggcaacgggaatttgcccagg
gtaaataataatagcagtaatcagaatgatgcaggcgggcccgaagggaataaccatccc
gggatgggacaccaccacccgggtacctttcctccacctccttacggttacaaccagcac
tacagccgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgca
tcggggccgggcatgatggacccttacccccctaattcacacgaacacggctaccccaac
cattataacaactacagcccgttccagaacaggacttcttatcagggccaaggatacggg
gccatgaattccccgcgtaacaaccagcctccggcggctggggggcagccaggcaagcaa
cagccagcaggaggaaccacagctatggctgcctcttataataatcagaggtataacatg
ggaaaccaacaacctacgtctacgccaactttaaatcagcttttgacatcccccagctct
accaggagctacccgaattacccccaaggagactataacaatcaggaaggggccaacaag
ggaccaggagacatgggcagcagtcagtatggtggggtccatccgggttggcaacaaagg
acccaccacccgcctcccatgagcccgggaaacactggacaacctccaaacagaaatcag
cctccaagcccaatggaacaagtagggaagatgcgcagccagccgtacggaggacccaac
ccctactctcagcagcaacaagggcctcccacagggcctggaccccagcaaggaggctct
tacccaggccagggctacggacctcccgggcctcagagatatcctatggggatgcagagc
cgaacacccggcagtatgggcagcatgcagtatggacagcagatttcatcctatggacag
cagggcccgggtggctacagccaacagagtcaggggtactatgggcagcatggtccccca
cctcaccctggccagcagcagcctccgtaccctggccaaccacagggcagctctggacct
ccgtacccccagcagggccaccctgcgcagcctcctggccaacatgggcagccaggaccc
ccttaccaacaatctcaaggtccccatggccctcctccaggccagcctccttatagtcag
ccctcacagccacagccaggacagccaccctacgtccctccccaacagcagcagcagcag
cctcaacagcagcagggtcctggtccccaaagtcagcagggccctccaggccagcccggc
tacccgcaaccccctgggccagggcagccaccaccgcagcaaaccccgcagcagcagcaa
gggcccccacaaccacaacaacaacaacagcaacaacaacagcaacaaccacaaccagga
ggaccgcctcctcaagcccagcaacctccaggtcatggccaacagggtcaaccatcacct
tactctcagacacccccactgcagcagcagcaacaacaacaacagcaacaacagcaacaa
caacagcagcagcagcagcagcagcatcagcaacaacaacagcaacagcaacagcagcaa
cagtcaccatatcagaggttcccacctcctccacaggaactctcccaggattcctttagc
tcccagtccagcgctcctccttccaaccagcccatggcttccaacaagagcagtcaagaa
gacagcatgcaggccaggccatccagtctgccggatctgtcgggctccatcgatgacctg
cccaccggcacagagggggccctgagtccgggcgtcagcacttcaggggtgtccagcagt
cagggcgagcagagcaaccctgcccagtcgcccttctctccgcacacttcgccccacctc
ccaggcatacgcgggccctcgccatcacctgttggctcccccgccagcgtcaccccctcc
cgcaccggccctctgtcccctgctgctgtgccaggtaatcagatgcctccccggccgccc
agcgtccagtcggacagcatcatgcactcttccatgaaccagtcagccatgggccaggac
agggtgtacatgcgtaaccctcagatgcctccatacgggtcccctggacaacctggctcc
gccttatctccacgccagtcttcaggaggccagatgcatggtgggatgggaccctatccc
cagaacaactccatgggaaactacgggcctcagggcggccagtatggcccacaaggttac
cccaggcagcccggctacacagggatgcccaatgccaactatcccagcggccccgggatg
ggcggctccatgaaccccatgcccggtcagggcagcggggctccttacggaagcatgcca
ccgggtagaataggcccagggcagatgggtgctcggccctatggccccgggatggcctct
aacatgggcgccatgcctcctcaggtggcgtctgggatgtgtccccctccaggcatgaac
aggaaggatggcggaccctccatgcaccatggacccacaaactccatacacaacaggcca
cctggctaccctaacatgtcccagggcatgatgggaacaggctctccatacggccctggc
atgaacagcatgcacggtatgatgaaccaggcggggccagggccgtacccaatgggagca
aacatggccaacaacacccctggaatggctcccagtacagagtttgccatggacaaaatg
aaccctgcccagaagatgaacaacaaagtggacgggactcccaagcctgaatcgaaaaag
aagtcgagctcttccaccatcaccaacgagaagattactcgtctgtacgagctgggcccg
gagccagagaggaagatgtgggtggaccgatacctggccttcgccgaggagaaggccatg
ggcatgaacaacctgcccgccgtgggccgtaagcctcttgatctcttcagactctacgtg
tccgtcaaagagatcggtggcctcacccaggtgaacaagaacaagaagtggagggagctg
gccaccaacctgaacgtaggcacgtcgagcagcgcagccagttcgctcaagaaacagtac
atccagtgtttgtacgccttcgagtgcaagattgagcgaggcgaggacccgcccccagac
ttcttcaacacagacaccaaaaagaaccagccgaagatccagcctcccagcccagctggt
tctggatccctgcaaggaccccaaacacctcagtccaccagtagttcaatggcagagggg
ggagacctgaagccccccaccccagcatccaccccacacacacaaatgcctccaatgcct
ggtgtcaggagtagcgtcaatcttcaggacccttttgctgatggtggagacccggcattt
tccagaaggaatgccatgacccccaactctcagggctaccagcccgggatgggtggccca
gagatgatgggtcggatgggtccctacgagtccaacaaggacccctttggtggcatgagg
aaagctggagagcagtttatgccaccaggccccaacagtggcatgggagaacagtataac
agaggcccacctggccccatgggcaacatgcagatgggccagaggcaacagtacccatac
ggatatgacagaagacaggagccaggcatgggccctgacggcagcatgggaccaggagct
cctcagcccaacatgatgccttctggagctgacacagggatgtactcacccagccgccct
ccaccacagcaacggcatgagtcctataccaatcagtaccctggccaaggagctccccct
ggtggcccatacccaaatcaacagccaggaatgtatccacagcagcaaccgaactacaag
cgtcctgtagatggagggtatggtcctcctgccaagcgccatgagggagaaatgtacaat
gtcccctatagtggtcagcagcagccaggaccacagtcctcagggccccagggccaacag
gatatgtataaccagtataatgcgtaccctggaggggaacgcagaccaccaggcccacag
aaccagttccccttcccctttggtcgggagcgaggaccatcaactgcaggccccaattcc
cagtctccaatgcctccccagatgatggcaagccccatgccttcaggtcctgatggcccc
cagggtccaatgtggcagggccgcactgagatgggctaccctaactatcccaaccgacag
ggacctcctgtaccaggacaaggccctggctaccatggcatgaaccgttcagaagagatg
atgccgtcagaccaacgcatgaaccacgaaggccagtggcccgggcacgtcaaccagcgg
cagccgccgtttgggcccggtggctctggacctcccatgaccagacccctgccatccacc
taccagacttcccagaaccacattcctcaggtgtcgagcccagcacccatgccccggccc
atggaaagcaggacgtcaccaagcaagtccccctacatgcatccgggcattaaggtgcag
aaagctggacctccagtacctgcctcacacattggccaggcccctgtgccgcaacccatg
atcaggcgagatgtggccttccctccaggctctattgaggcctcccaaccccaccttaag
ccccgcaggcggctcaccatgaaagacattggcactcctgaagcttggagagtgatgatg
tcactcaagtcaggcctactagctgaaagcacctgggccttggacaccattaacatacta
ctgtatgacgacaacagcatttctactttcaacttatgccagctacctggattcttggag
ctggtggtggagtacttccgacgctgcctcatcgagatctttggcattttaaaggagtac
gaagtaggggacccaggccagcgcacccttatagaccccaacgctgctgaggactctgat
gatgaaattccaatgccagacggcgaggacatggacacggacgaagaggacgaggaagac
gaggaggtagaggaatcaaagaccaatcccgacaccaccttaacagttcaggtgaaacaa
gaggaggagagctcccagaaagacaagtcttcagaggatgaggaagaggagaaggagagg
gagtcttttatcaaggaacccaatacctctacctcagggtcctccctggaccccaacctc
cactcggaaaagctcaagcaggctagcaagtttgataaactccctatcaaagtggtgcgg
aagaagaatcccttcctggtgaaccactcgtccaagcttgggcagcggcagagctttgac
agcggcttgatacactggagcattggtgggggtgacactaccgaacacatccagacccac
tttgagagtcggatggaccttctcaagcagcggaaacacaaaccaactgccactgagaac
cgcaagaaggtccaggtgcttgagacggcaacagaaaaccctgagaaatccaagtccaat
ggggaggataagcctcggcaacagcctccccagtcttctgaacctcagaagtctccagca
gagaagacctctcctcctcttcccattggcgcaccagtcactgccaccatcgacgacgta
ctctctgcgcgcccagggtcagtcacagaggaagtagttcgtggaggcgcagaggaacag
aaggaaaatggcaagtacctattcagcatcaaccctgacctccagagccgccgcaacatc
aagatcctggaggatgagcctcacagcaaggacgaaacgccactcagcactctgtctgac
tggcaggactcgctagctcggcgctgcatctgcatttccaacatcgtgcgcagcctctcc
tttgtcccgggtaacgacctggagatgtcgaaacacccaggccttttgctgctgctgggc
cgcctggtgctgctccaccacaggcaccctgaacgtaaacaggcgccggtcacttacgag
aaggaggaggaggaggatgaaggcgtgagctgtgagagggacgaatggtggtgggactgc
ctcgaggtcttgagggagaactgcttggtcactctggcgaacatctcaggccagctggac
ctttctatctacccagagagtatatgcctgccactgctggatggcctgctccactgggcc
gtctgcccttcagcagaggccctggaccccttccccacactggggccccatggctcactt
tcccctcagagactggttcttgaaaccctcagcaagctcagcatccaggacaacaacgtc
gacctcattctggcaacgccgccattcagccgcttggagaagctctacggctcactggtg
cgtctggtcggtgagcgcaaggtggccgtctgccgggaaatggcggtagtcctgttggcc
aatctagcccagggtgacagcctggcagcgcgggctattgctgtgcagaaaggcagtgta
ggtaacctactgggcttcctggaggacagcctagctgccacacagtaccagcagagccag
agctccctgctacaaatgcagggtgggccgcagtttgagcccaccagtgtggacatgatg
cggcgggcggcccgggccctgcacgccctggctaaggtagaggagaaccactcggagttc
actttgtacgagtcgcggctactggacatctcagtgtccccacttatgaactctctggtg
tcccaagtgatctgtgacgtactgtttctgattggccagtcatga
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integrated database retrieval system
