Lates calcarifer (barramundi perch): 108900341
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Entry
108900341 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase
KO
K15732
RNA polymerase II subunit A C-terminal domain phosphatase [EC:
3.1.3.16
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108900341
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108900341
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
108900341
Protein phosphatases and associated proteins [BR:
lcf01009
]
HAD phosphatases
Fcp/Scp phosphatases
108900341
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
108900341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FCP1_C
BSH_Fcp1
NIF
PTCB-BRCT
BRCT
Biotin_lipoyl
RTT107_BRCT_5
Nairovirus_Gn
Motif
Other DBs
NCBI-GeneID:
108900341
NCBI-ProteinID:
XP_018556844
UniProt:
A0AAJ7QIB0
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All DBs
Position
LG3:4290223..4359340
Genome browser
AA seq
1010 aa
AA seq
DB search
MEDPPADSGGGGGGAAAEGPAVQVADICWPTGALPLRLLEWKVKPGSLVNVDSVLALCAP
IPQEKGIEGARLPEKKVKSDRAGVVKELCCQLGQVIPPGGVIVRVEECSHPIVMKGLCAE
CGQDLTQLQSTNGNQQTPISTATVSMVHSVPELMVSSEQAEQLGREDQQRLHRNKKLVLM
VDLDQTLIHTTEQHCQRMSNKGIFHFQLGRGEPMLHTRLRPHCKEFLEKIAKLYELHVFT
FGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDRED
VWKFAPNLITVKKYIYFQGTGDINAPPGSREAQMARKGKVPSGRQAENTDSAGTLGAEEH
NNGLRKRAKDHSVSGKDEPTTSQSSQGAATNERTHPAGVLEEESGQSKEAVAEAGSKETQ
EGDRTNVKEDESNRTQEAQEGANSSAPSHESNNLDFDLSSDSDSDSLTEKPPSSESDSEG
KFCQAKKPGQEGITQEPSDGDGAREGDSKSRGEGENSSDVAEPSGVLLPDPELGNGCSDR
REPETESQNSEQSGVTMGEELLDQSMEDEEEEEEEEADNDQDDHLIYLEEVLERIHAEYY
ARYEAYLRKEASDTPDIRKIVPELKGKTLEGTMIVFSGLYPTNYPMERTREYYHAKALGA
KIGKNLVLSSQDPCRTTHLIAARAGTEKVRQAQGCKHLYVVNPDWLWSCLERWERVEEQL
YPLKEDYSKTPRSNSPAAFLDSQGSLQKPIFHPAPIHHRPPPPAPEVRTYDPVTGKLIRR
GPQVSRPPPYLQASGSLLLSDHREQSCLRGTSKGQQDEAAGSSQDDEQPGPSRRKRQPSM
SETMPLYTLCKEDLESMDKEVDDILGEESDNESEGRGKEKPGNEEVEDEDEEPQQQQQQQ
QQHQHQHQHQQQQQEQPGAGQIAGGGLNPQALSIKERLPTPSSEASLPVGVPRGHKRKHE
EAKEEEDDDEVENKQSADESSKDSNEEEEGSSSEADEMAAALEAELNDFM
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggaggatcctcctgcagattctggcggtggtggcggcggtgcagcagcggagggcccc
gcggtgcaggtggcagatatctgctggccgaccggggctctcccgcttcggcttctagag
tggaaggtcaaacccgggtctcttgttaacgtggactccgtgcttgcactgtgtgctccc
atacctcaggagaaggggatagagggtgccaggctgccagagaagaaggtgaaatcggac
cgtgctggagtagtgaaggagctatgctgtcaacttggacaagtcatacctcccgggggt
gtcattgtcagagtagaagaatgcagccacccgatagtgatgaaaggtttatgtgctgaa
tgtggccaggacctgactcagctgcagagcacaaatgggaaccagcaaactcccatctcc
acagcaacagtctccatggtgcacagtgtccccgagctgatggtcagctcagagcaagca
gaacagctgggtagagaagaccagcagagactccaccgaaacaaaaaactggtcctgatg
gtggatctggaccagaccctgatccacaccactgaacagcactgccagcgtatgtccaat
aagggcattttccacttccagcttgggcgaggagagcctatgctccacacacgattacgc
ccacattgcaaggaattcctggagaaaattgccaaactctatgagttacacgtcttcaca
ttcgggagtcgcctttatgcacacaccattgccggttttctggatccagaaaagaagctt
ttctctcatcggatcctttctagagatgaatgcatcgatcctttctccaagacggggaat
cttaggaaccttttcccttgtggggattcgatggtctgcataatcgatgaccgagaggat
gtgtggaagtttgcacctaacctcatcactgtgaagaaatacatctacttccaaggcaca
ggggatatcaacgctccccccggatcacgggaagctcagatggccaggaaaggtaaagtc
ccctcaggtcggcaggcagagaacacagactcagcggggacgcttggcgcagaggagcat
aataatggcctcaggaaaagggcgaaggaccacagcgtttctggaaaggatgagcccaca
acatctcagtcttctcagggtgcagcaacaaatgaacggactcatcccgcaggggttttg
gaggaagaatcaggacagagtaaagaggcagtggctgaggcggggtcaaaagaaactcag
gagggtgacaggacaaatgtaaaggaggatgaaagcaacaggacacaagaggcacaggag
ggtgcaaactcatcagcacccagccatgagtccaataacttggactttgacctttccagt
gacagtgacagtgactcccttacagaaaagcccccctcatcagagagtgatagtgaaggc
aagttttgccaagcaaagaagcctgggcaggaaggcattacgcaagagcccagtgatggg
gatggggcaagggaaggggacagtaaaagtcggggtgagggagaaaacagctctgatgta
gcagaaccctcaggagttcttctcccagacccagagctgggaaacggctgttcagacagg
agggagccagagacagagtcccagaatagtgaacaatcaggggtcaccatgggggaggag
ctgctggaccagagtatggaggacgaggaggaggaggaggaagaggaagccgacaacgac
caggatgatcacctgatctacctggaggaagtgctggaaagaattcatgcagagtactac
gcccgctacgaggcctacctgaggaaggaggcctccgatacgccggacatccgcaagatc
gtcccagagctgaaaggcaagacacttgagggcacgatgatagtgttcagtggtctgtac
ccgaccaactatcctatggagcggactcgtgagtactaccatgccaaggcactgggggcc
aagatcggcaagaatctggttctcagctcacaagatccctgtcggacaacacatctcatt
gcagcaagagctggcaccgagaaggttcgccaggcgcagggctgcaaacacctctatgtt
gtcaaccctgactggctgtggagctgtctggagcgctgggagagggtggaggagcagctg
tacccgctaaaggaagactactccaagacgccgaggagcaacagtccagcagctttcctt
gacagtcagggttccctgcagaagcctatttttcacccagctcccatccaccacagacct
ccacctccagccccagaggttcggacttacgaccctgtcacagggaagctgatccgcagg
ggccctcaggtgtcacggccaccgccctacctccaggcatcagggtctttgttgctctca
gatcacagagagcagtcttgtctcaggggaacttcaaagggtcagcaggatgaagcggcg
gggtccagccaggacgacgagcagcctgggccatctcgtcggaaacgacagccgagcatg
tcagaaactatgcctctgtacacgctttgcaaggaggatctggagagcatggacaaagag
gtggatgatatcttaggtgaggagagcgacaacgagagtgaggggcgagggaaggagaag
ccaggtaatgaggaggtggaggatgaagacgaggagccgcagcagcagcagcagcagcag
caacagcatcagcatcagcatcagcatcagcagcagcagcaggaacaaccaggagctgga
cagatagcaggaggagggctcaatcctcaggcgctgagcatcaaagaaaggcttccaacg
ccatccagtgaggccagtctgccggttggtgtgccaaggggccacaaacgtaaacacgag
gaagccaaggaggaggaggatgacgacgaggtggagaataagcaatctgcagatgagtcc
tccaaagactccaacgaggaagaggaaggcagcagctcagaagcagacgagatggcggcc
gccttggaggcagagctcaatgactttatgtga
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