Lates calcarifer (barramundi perch): 108900352
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Entry
108900352 CDS
T04895
Symbol
zgc:91944
Name
(RefSeq) LOW QUALITY PROTEIN: homeobox-containing protein 1
KO
K24885
homeobox-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108900352 (zgc:91944)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
108900352 (zgc:91944)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
AbiJ_NTD3
HTH_3
Motif
Other DBs
NCBI-GeneID:
108900352
NCBI-ProteinID:
XP_018556862
UniProt:
A0AAJ7QI58
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Position
LG3:4602824..4618469
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AA seq
511 aa
AA seq
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MRQWCVPAATPRTEPLPGRLSVSPPPSDARMECCEVEPRYTIEQIDLLQRLRLSGMTKPQ
IIHALESLERLDPDHRPSHCDSHPAPSNNTPTTAAPAPSSSSSSSSSSLSLASATTQTSG
LDGAALSPSHSYEASPPPLYPPSVAVQRSFSYDMMGEEEWDLEEKVEEYMRRDSNLVKEE
IKTFLNNRRISQAIVGQVTGISQSYISQWLLQQGLEMSDSKRRAFYRWYLLERNNPGLRW
SESQHSVSPMPRARGGDRDGTVAGVSGSLPNILPNPNTNLNPNPVWSRQRELLMHLLPWY
TAAAAAAQAQPGATLSMRSLVKEEPDWRTGIMSGDRAGMVGGPLRLRRGSRFTWRKECQS
IMESFFMENQYPDEAKREEIASACNSVIQKPGCKLSEFERVTALKVYNWFANRRKEMKRR
ANIEAAILESHGIEVPSPSCHSNGEEGEMQEFADQVNHRFSEQEDASSQRIIDQQDPSSL
ATTEVAALPSPTPQVLEQKDDDSKRETVDEE
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgcgacagtggtgtgtccccgctgcgaccccacgcactgaaccactcccggggcgcctg
tctgtgtcaccccctccatcagatgccagaatggagtgctgtgaggtggagccacgctac
accatcgaacaaatcgacctcctgcagcgcctgcgcctgtccggcatgaccaaacctcag
atcatccacgctttggagtccctggagaggctcgacccagaccaccgcccgtcgcactgt
gactctcacccggccccgtccaacaacacccccaccacagctgccccggccccgtcctcc
tcgtcatcttcctcctcctcctcgctctccctggcttctgccaccacgcagacctccggg
ctggacggcgccgcgctgtcacccagccatagctacgaggcctcgcctcctccgctgtac
cctcccagcgtggcggtgcagcgatcgttcagttacgacatgatgggagaggaggagtgg
gacctggaggagaaggtggaggagtacatgaggagagacagcaacctggtgaaagaagag
atcaaaactttcctcaacaatcgcaggatctctcaggcaatcgtaggccaagttacaggc
atcagccagagctacatctcccagtggctgctgcagcaaggcctggagatgagcgactcc
aagcgcagagctttctaccgctggtacctgctggagaggaataacccagggctgagatgg
agtgaaagccagcacagcgtgagccccatgcccagggccaggggaggggacagagacggg
acggtagcaggggtgagcggcagcctccccaacatcctccccaatcccaacaccaacctc
aaccccaaccctgtgtggagcaggcagagagagctgctgatgcacttgctgccgtggtac
actgctgccgccgcagccgcccaggcccagccaggtgccaccttatcaatgcggtctttg
gtgaaggaggaacctgactggaggacggggatcatgtctggtgacagagcagggatggtg
ggtgggcctctgaggctacgtagaggaagcaggttcacctggaggaaggagtgccaatcc
atcatggagagtttcttcatggagaaccagtatccagacgaagccaagagagaggagatc
gccagtgcctgtaactctgtcattcagaaaccaggttgtaagctgtctgagtttgagcgc
gtgacggcattgaaggtgtacaactggtttgccaaccgccggaaggagatgaagagaaga
gcaaatattgaggctgccattttggaaagccatggaattgaggtgccaagtccaagctgc
cactcaaatggtgaggagggggagatgcaagagtttgccgatcaggtgaatcatcgattc
tcagagcaagaagacgcatcttcccagaggatcattgaccaacaagacccctcctcattg
gctactacagaggtggcagccctgccaagccccacccctcaggtcctggaacagaaagat
gatgattcaaaaagggagactgtggatgaagagtga
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