Lates calcarifer (barramundi perch): 108900384
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Entry
108900384 CDS
T04895
Symbol
sync
Name
(RefSeq) caldesmon
KO
K10377
syncoilin 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108900384 (sync)
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type IV
108900384 (sync)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF6988
Filament
DUF3698
DUF1189
DUF4407
zf-C2H2_3rep
Motif
Other DBs
NCBI-GeneID:
108900384
NCBI-ProteinID:
XP_018556910
UniProt:
A0A4W6FRJ8
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Position
LG3:6253947..6258361
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AA seq
720 aa
AA seq
DB search
MEDIDDNISSIGFEPLFIKEEDGGPDRAIMEQREDSPGLTFTGAHLNSSTLIKPYLQEMD
DLLKSCEELTGIPIGSHFSESYTETSMIESIHGQSKKEVTMESYRETSVSPQAYLSTSYI
DTHMDGAETEDQPAQGQLQGMGAIINRCGVNAEVPRQTEMPITSAGNKLSETMVEYEGQL
LGMLAMLESCMEEAGMDFQPQDWATDESHEYVHISKNPHHYRGTTLVPIQQERPVKLETQ
PMQLGSWAAQHAEGDKVSEDCWNGVTVGSATNRTQQSPSLGCDNMGGNSMERLERSGESH
QGALEPQFKFSGSSGPLDSNENDPMYCEGTKTRFLFDESTETKADRTGTEVDDTEMTPAE
ETTELKMDTTDLRSGTNELGELGSQMEKCIDEVQQLEKRRKELLAEVLELRGNKNREDAE
GSNEEEEVSEEQIDSKMAELMNILKKEEEGRREERKREIRNLREQRAEEEKSMWKVNLER
QGIQDELRKLKRRLFAMVRDCTHSQASLNNQHREMELLKREEEKLQSLVLQLTEEGCQLR
SAQQQQLLEIQAELHAKTSSQTSNTQEELTECRRHSCGDIQQYLQGGLRALEHRYEPILL
ALLKRREATAGVLVKAKEQAQELKSQLRPLKEEIQKLMLQRACLEEKLKLIHIHRREDVG
QYKETVYNLEESSRELKTELKIQKKKAKDMEELRDSLTKQLLLYRAAIEDHNKCDHEENT
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatagacgacaacatttcatctatagggttcgagcctctcttcatcaaagaa
gaggatggggggccagacagagccatcatggaacaaagagaggactcacctggactcacc
ttcacaggagcacatctgaattcatcaactttaattaagccatacttacaggagatggat
gacttattgaagagctgtgaggagctcactggtattcccataggctcacacttctcagaa
agttatactgaaacaagcatgattgaatcaattcacggtcagagcaaaaaggaagttacc
atggagagctatagagaaacaagtgtatccccccaagcatatctttccaccagctacatt
gacacacacatggatggggctgaaacagaagaccagccagcacaagggcagttgcagggc
atgggtgcaatcatcaacaggtgtggagtgaatgcagaagttccacgccagacagaaatg
cccatcacttcagctggcaacaaactgagtgaaaccatggtggagtatgagggccaactg
ctcgggatgttggccatgctggagagctgtatggaagaggctgggatggactttcagcca
caagactgggctacagatgaaagccacgaatatgtacacatcagtaagaatcctcatcat
tacaggggtacaacgctggtgcccattcagcaagagaggccagtgaagttggagacccag
ccaatgcaattaggatcctgggctgctcaacatgcagagggagataaagtttcagaggac
tgctggaatggagtgacagtaggttcagcaacaaacagaactcagcagagtccttcactt
ggctgtgacaacatgggtggcaactcaatggaaagactggaaaggtcaggggaatcacac
caaggggctcttgaaccacagttcaagttttcagggtcatcagggccactggatagtaat
gaaaatgatccaatgtactgtgaagggacaaagacaagattcctgtttgatgaaagcact
gaaaccaaagctgacagaactgggactgaggtagatgacactgagatgactccagctgaa
gagacaacagagctcaaaatggacaccactgatctgagatctggtacgaatgaattaggg
gagctggggtctcagatggagaagtgcattgatgaagtacagcaattggagaagaggagg
aaggagctgttggcagaagtgctggagttacgagggaataaaaacagagaggatgcagaa
gggagcaatgaggaggaagaggtatcagaagagcaaattgacagcaaaatggcagagcta
atgaatatcctaaagaaagaggaagaggggagaagggaggagaggaagagggagattcgg
aacctcagggagcagagagcagaggaggagaagagtatgtggaaagtcaacctggaaaga
caggggattcaagatgagctcagaaagctcaaaaggaggctctttgccatggtcagggac
tgtacccacagtcaggcttccctgaacaaccagcaccgtgagatggagctacttaagaga
gaagaggagaagctgcagtccctggtgctccagctgacagaggagggctgccagctcagg
tcagcccaacaacaacagctcttagaaatacaggcagagcttcatgccaagacctccagt
cagacctctaacacccaagaggagttgactgagtgcaggaggcactcctgtggagacatc
cagcagtatctgcagggtgggctgagagcccttgagcacagatatgaacccattttgctg
gcgctgctgaagagaagagaggcaacagctggagtgctggtgaaagccaaagagcaggcc
caggaactgaagtcccagctgagacccctaaaggaggagatccaaaagctgatgctccag
agggcttgtttggaggagaaactcaaactgatccacatacatcggagagaggatgtgggg
cagtacaaggagacagtgtacaatctggaggagagcagcagagaactgaagactgagtta
aagattcagaagaaaaaagccaaagacatggaggagttgagagacagccttaccaaacaa
ctcctcctttacagggctgccattgaggaccataacaagtgtgaccatgaggagaacaca
tga
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