KEGG   Lates calcarifer (barramundi perch): 108900385
Entry
108900385         CDS       T04895                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03082  ATP-dependent chromatin remodeling
lcf03083  Polycomb repressive complex
lcf04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108900385 (rbbp4)
   03083 Polycomb repressive complex
    108900385 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    108900385 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lcf03036]
    108900385 (rbbp4)
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     108900385 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     108900385 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     108900385 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     108900385 (rbbp4)
    PRC2.2
     108900385 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     108900385 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108900385 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    108900385 (rbbp4)
   NuRF complex
    108900385 (rbbp4)
   NuRF complex (fruit fly)
    108900385 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_EIPR1 WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_EML EIF3I Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 WD_LRWD1 WD40_RFWD3 Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_RIG_1st eIF2A WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 MIOS_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 108900385
NCBI-ProteinID: XP_018556911
UniProt: A0A4W6FS11
LinkDB
Position
LG3:complement(6258672..6264072)
AA seq 425 aa
MADKEAGTFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVSRPEGK
DYTVHRLVLGTHTSDEQNHLVIASVQLPNDDAQVDTTHYDSEKGEFGGFGSVSGKIEIEI
KINHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDASGECHPDLRLRGHQKE
GYGLSWNSNLSGCLLSASDDHTICLWDISAVPKERKTVDAKTIFTGHTAVVEDVSWHLLH
ESLFGSVADDQRLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVA
LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQTPEDA
EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGGTD
PEASA
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcggacaaggaagctggtacatttgatgatgcagtggaggagagagtgattaatgag
gagtacaagatctggaagaaaaacacccccttcctctatgacctggtcatgacccacgct
ttagagtggcccagcctcactgctcagtggctgcctgatgtctccaggccagagggcaag
gattacaccgtgcaccggctggtgcttggcactcacacctctgatgagcagaatcacctg
gtcattgccagcgttcagctgcccaatgatgatgcccaggttgacaccacacattacgac
agtgaaaaaggagagttcggaggctttggctcagtgagtggcaagatcgagatagaaatc
aagattaaccacgaaggagaggttaaccgtgcccgctacatgccacagaatccctgcatc
atcgccaccaagacccccacctcagacgtgcttgtgtttgactatactaagcatccctcc
aagccagatgcttctggagagtgccaccctgatctgcgtctcagaggtcatcagaaagag
ggctatggtctctcctggaattcaaatctgtctggctgtctccttagtgcatcagatgac
catacgatctgtctgtgggacataagtgctgtgccaaaggagcggaagaccgttgatgcg
aagacaatcttcactggacatactgctgtggtggaagacgtctcttggcacttgcttcat
gagtcactctttggatctgtagcagatgaccagaggctcatgatctgggacactcgttca
aataacacctccaaacccagccatgcagtggatgcccacactgcagaggttaactgtttg
tcatttaacccgtacagcgagttcattcttgccactggctctgcagataagactgtggct
ctttgggatttgagaaacctgaaacttaagctgcattcctttgagtcacacaaggatgag
atcttccaggttcagtggtcaccacataatgagaccatattggcatccagtggaacggat
cgtcgcctcaatgtctgggatctcagtaaaatcggagaggagcagaccccagaagatgca
gaggatggtccacctgagctactttttatccacggaggccacacagccaagatctctgac
ttctcctggaaccccaatgagccctgggtcatttgttctgtgtctgaggacaacattatg
caagtctggcaaatggctgagaacatttacaacgatgaagatcctgagggtggaacagac
cctgaagcctcagcgtaa

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