Lates calcarifer (barramundi perch): 108900510
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Entry
108900510 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 10-like protein
KO
K16727
Rho guanine nucleotide exchange factor 10
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108900510
03036 Chromosome and associated proteins [BR:
lcf03036
]
108900510
Membrane trafficking [BR:
lcf04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108900510
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
108900510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_2
PH_19
RhoGEF
Beta-prop_LRRK2
WD40_CDC20-Fz
DUF7675
KH_GLD-3_1st
IQ_SEC7_PH
CFAP43_N
Motif
Other DBs
NCBI-GeneID:
108900510
NCBI-ProteinID:
XP_018557116
UniProt:
A0AAJ7VJI6
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Position
LG6:875841..916745
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AA seq
1347 aa
AA seq
DB search
MTSRHLLCHPLVSISNGESHMEEDEDEDEQGEKFEFDDSDDMGPSEIHYNSLMKSDSTTH
TTVSDLYAQTSTVQEMARQGVNGTSSTGQEGQISTSTHQCCSDMEVRESPEGRSTSSDLG
VTGDSESFCKASSIYEGQSSLPPEASLESRSPVNGYSPQQDTIEEEAFSSVSPQTEHHTA
GVDRPTNQCTVTCSPESVVRDLEVIYDDVPTENLQHPVDGVDADDIYEDIQRPDHRGSNG
WSSSEFDSYDELSDSETVPPARGSSKLPADVLRLKKRCAVTRRELAVRLGAPHVSQIRQS
CDTKVQQFMKAARNGTKDGLEKTKLAMIRKVSFLQRKDSTGEGKDDAGYMDVSVCELKHP
PPQLCPMPEGLNSQQIVRRLILSSIVQSESSYLDSLKRILQEYQKPLLEPQNWILNLKKV
RQIFYRVQEIHQCHSMFQIALASRVAEWDHSEKIGDLFVASFSKSMVLNVYSDYINNFTN
AMALIKKACMSKPAFLDFLKKKQASSPDRITLYGLMVKPIQRFPQFILLLQDMLKNTPKS
HADRLPLQLALTELETLAEKLNEQKRVADQEAEIQQLAHSMGDRNFNKLLNPEQRLLIQC
ELLTEIVYGDKGQVLKSKERKVFLLNDTLICANINLKGPPDISSLVPVGPKYTMKWCAPL
LQTQVVEVGRDSLQNRDSVVIGRRRSSTSSSTGKVFLGPPRLYQELEELQHDLAVVEEVS
LLVGTLHGTYQNLNTTVSQDWCLALQRLIRLKEEEIQNANKCRLRLSVPGKPDKSGRPVS
IMVVFNTPSPLSKISWVNRLHLAKIAQKQENTPGWECAEDDGKTKAPLSFPLLTCKLPVF
SPRTHTLKLEAALHSPSQSSLLGFCTASTSLPQGYLWVAGGGGISNHGQVEIFSLNRATP
RLVKTVPLRAPVLCLEYVKEWCPSAEEEAEKTQSAVKIGNIICVGLQDGSIHVYSSVDTA
VQCLLTLVNPDSCPVVCLKHSLSFLFAGLASGKVAVYQRKTGERLWDMDSCRLVSLGSEP
VCSLLTIEDAVWASCANQVTVIQGSSLHTQSFEAHSDPSYSVSHMVRSGXGVWMAFTQGS
SIHLFHTETLEPLQEVNISTRTTHLTPGQVCVSSLLICQGLLWVGTSQGIILAFPVPTLE
GIPKITGKGMTSLNAHCGPVDFLVPASSTLASDLLRRDSILNTSEEGVNGEGGAGRGGKV
DVGGDEGGQRLEQSSYSQHSGGSPQREQTPKRLLLQYRLHSTCQLPGKLLTAQPEQGNLR
APPDSLEHSPEDGSIYEVSEDPDVWVRGRPVEWGKDGEARRSKVTSTAIFSGGRGYRRIG
QIASADTCSDSTENTLLVWQIPLTLSQ
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgacctctcgacatctactttgtcacccgctggtgtctatatctaatggggaatcacac
atggaggaagacgaggatgaagatgaacagggggaaaagtttgagtttgatgacagtgat
gacatgggaccttcagagattcattataactctctcatgaagagtgactcgaccacacac
acaacagtgtcagacctttatgcccagacaagcacagtccaagagatggcaaggcaaggt
gtgaatgggacatccagtacagggcaggagggccaaatctccacatcgacccaccagtgc
tgctcagatatggaagtcagagagtcaccagagggacgttccacctcctctgatttggga
gtgactggagactcagagagtttctgtaaagcaagcagtatctatgaaggacagtcttct
ttaccgccagaagccagtctggagtcgaggagtccagtaaatgggtacagtccacaacag
gacactattgaggaagaggcattctcttctgtcagtccacagactgagcatcacacagct
ggtgtagacagaccaaccaatcagtgtactgtgacctgtagccccgaaagtgtggtcaga
gacctagaggtcatctatgatgacgtgcctactgaaaacctacagcacccggtggatggt
gtagatgcggatgacatctatgaggacatccagagacctgatcaccgtggctccaatggc
tggagctccagcgagtttgacagttatgatgaactgtctgacagtgagactgttcctcca
gcccgcggcagcagcaagctgcctgcagatgtgctaaggttgaaaaagcgttgtgctgtc
accaggagggagctggcggtgcgtcttggtgcgcctcatgtttctcaaatcagacagagc
tgtgacactaaggtgcagcagtttatgaaagcagcgaggaatggtaccaaggatggttta
gaaaagacaaagttggccatgattcgcaaggtgtcattcctgcagaggaaagactccaca
ggtgagggaaaggatgatgcaggttacatggatgtgtctgtgtgtgagttaaagcaccct
ccaccacaactctgtcccatgccagaggggctaaacagtcagcagattgtcagacgtctc
atcctcagctctattgtgcagagtgagagcagttacctggactctctcaagagaatcctc
caggagtaccagaagcctttgctagagccacagaactggatcctcaacctcaagaaggtg
cgtcagatcttttaccgtgtgcaggagatccatcagtgtcactcaatgttccagattgcc
ctggcatcccgtgtggctgagtgggatcacagtgagaagattggagacctgtttgttgct
tcgttttcaaaatccatggttctgaacgtgtacagtgattatatcaacaacttcaccaat
gccatggcactgatcaagaaggcctgcatgtctaaacctgccttcctggactttcttaag
aagaagcaggcatccagtccagacagaatcactctgtatggcctcatggtgaaacctatc
caacgctttcctcagttcattctgctgctgcaggacatgttgaagaacactccaaagtcc
catgctgacaggttgcccctgcagctggctctaactgagctggagaccctggctgaaaaa
ctcaatgagcagaaacgtgtggctgatcaggaggctgagatccagcagctagcacacagc
atgggggatcgcaatttcaacaagctgctgaacccggagcagaggctgttgattcagtgt
gaactactgactgaaatagtttatggcgataaaggtcaagtcctcaagtcgaaggagcga
aaggtctttctgctcaacgacaccttgatctgtgccaatatcaacctgaaagggccccct
gacatcagcagcttggttcctgttggtcctaagtacacaatgaagtggtgcgctcctctg
ctgcagactcaggtggtggaggtgggacgggacagtctgcagaacagggacagtgtcgtc
ataggcagacgccgtagctccacctccagctccactggtaaagtgtttctgggtcctccc
agactgtaccaggagctggaagagctgcagcatgacctggctgtagtggaggaggtctca
ctgctggtgggcacactccatggaacctaccagaatctgaacaccacagtgtctcaggac
tggtgtctggctctgcagagactcatccgtttgaaggaggaggagatccaaaatgccaac
aagtgtcgcttgcgtctgtctgtaccaggcaaacctgacaagtctggtcgtccagtgagc
atcatggtggtcttcaacactcccagccccctcagtaagatctcctgggtgaaccggctt
catctggccaagatagctcagaaacaggaaaacactccagggtgggaatgtgctgaagac
gatgggaagacaaaagctcccctaagttttccactgttgacctgcaaactgcctgttttc
tctcccaggacacacacactgaagctggaggcagctcttcatagtccatctcagtccagt
ctgcttggtttctgcactgctagtacatccttaccacagggttacctctgggttgctggt
ggaggaggcatctccaaccatggccaagtggagatcttctctctgaaccgagccactcct
cgcctggtcaaaaccgtcccactgagggccccagtcctctgtctggagtatgtgaaggag
tggtgtcccagcgctgaggaggaggctgagaagacccagagtgctgtcaagataggaaac
atcatctgtgttggcctgcaggatggcagcatccatgtatacagcagcgtggatacagcc
gttcagtgcctgctgaccctggtgaaccctgacagctgtccagtcgtctgcctcaaacat
tcactgtctttcctctttgctggactggccagcggtaaagtagctgtgtaccagagaaag
actggagagagactgtgggacatggactcgtgcaggctggtgtcactgggctctgagccg
gtctgcagtttgctgacaattgaagatgctgtatgggccagctgtgcaaaccaagtcact
gtcatccaaggttccagcctccacacacagagctttgaagcccactctgatccaagctac
agtgttagccacatggttcgttcaggtnggggcgtctggatggccttcacccagggttca
tccattcaccttttccacacagagactttggaacctctgcaggaagtcaacatctcaacc
cgcaccacccatctaacaccaggtcaggtttgtgtctccagcttgctgatctgtcagggc
ctgttgtgggtggggaccagtcagggcatcatcctcgccttccctgtccccaccctggag
gggatccccaagatcacaggtaaaggcatgacgtctctgaatgctcactgtggtccggtg
gacttcctggtgccagcctccagcactctggcctctgatttgctcagacgggactccatc
ctcaacaccagcgaggagggtgttaatggagagggaggagcaggaagaggaggtaaagtt
gatgtgggaggagatgaaggagggcagaggttggagcagagcagctactcccagcactca
ggaggttctccacagagggagcagacacctaagcgtctgttgctgcagtaccgcctccac
tccacctgccagctgcccggtaagctgctgacagcccagcctgaacaggggaacctgaga
gcacccccagactcactagagcacagcccggaggacggctccatctatgaagtgagcgag
gaccctgatgtgtgggtgagagggcggcccgtggagtgggggaaggatggggaagccagg
cgcagtaaagtcacctcaacagccatcttctctggtggcagaggataccgcaggatagga
cagatagcctctgcagacacctgctcagactccactgaaaacacactgctggtgtggcaa
atccctctaactctcagccaatga
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