Lates calcarifer (barramundi perch): 108900566
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Entry
108900566 CDS
T04895
Name
(RefSeq) high-affinity choline transporter 1
KO
K14387
solute carrier family 5 (high affinity choline transporter), member 7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108900566
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108900566
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC5: Sodium glucose cotransporter
108900566
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Motif
Pfam:
SSF
Motif
Other DBs
NCBI-GeneID:
108900566
NCBI-ProteinID:
XP_018557202
UniProt:
A0A4W6FH62
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Position
LG1:complement(12749771..12759105)
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AA seq
590 aa
AA seq
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MTIHAEGLVAIVIFYVLILFVGIWAAWKNKNSGVGEGGDRSESIMVGGRDIGLFVGGFTM
TATWVGGGYINGTAEYVYLPDYGLAWAQAPFGYALSLVVGGLFFAKPMRSRGYVTMLDPF
QQLYGQRMGGLLFIPALMGEIFWSAAILSALGATLSVIVDININMSVVISAMIAIFYTLV
GGLYSVAYTDVVQLFCIFLGLWISVPFALSNPAVSDISVTAKKKIYQSPWLGKIDPEDKW
LWADNFCLLMLGGIPWQVYFQRVLSASSATYAQVLSFLAAFGCLVMAVPSVLIGAIGAST
DWNQTTYGSLPPKDKEESDMILPIVLQHLCPPYISFFGLGAVSAAVMSSADSSILSASSM
FARNIYQLAFRQSASDREIVWVMRLTIFVFGALATAMALLTGSVYGLWYLSSDLVYVIIF
PQLLSVLFVKGTNTYGSVAGYIFGLLLRIGGGEPYLKLPPFIYYPGWVTQERVHHLTGDV
EYFVQQRFPFKSVSMVASFLANVAFSYLTKYLFESGMLSHKYDFLDAVVSKHSKEIMDKA
TLVSNHDNIILSEMAPVRQALGTSLAGTFLNTEVLSDDGASSPEAFHNEN
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccacgccgagggtctcgtggctatcgtgattttctacgtcctgatcctgttc
gtggggatctgggccgcgtggaagaataagaactctggagttggcgaaggcggagaccgg
agcgagagcatcatggtcgggggaagggacatcggattgttcgttggtggattcacgatg
accgccacttgggtgggtgggggctacatcaatgggacagcagaatatgtctacctgcca
gactatggcctggcttgggcacaagcaccatttggttacgctctcagcctggtagtaggt
ggccttttcttcgccaaacccatgcgatcccgtggatatgtcaccatgttggatcccttc
cagcagctttatggacaaaggatgggaggcctgctcttcatccctgcactcatgggagaa
atattctggtctgcagccattttatccgccctcggtgcaactctgagtgtgatcgtggac
ataaatatcaatatgtctgtggtgatctcagctatgatagctatcttctacacacttgtt
ggaggactctactctgtcgcatacacagatgtggtccaacttttctgtatctttctgggc
ttgtggatcagcgtgcctttcgccctgtccaatcctgccgtgtcagacatcagtgttaca
gccaagaagaaaatctaccagtcaccctggctgggaaagattgatcccgaggacaaatgg
ctctgggcggacaacttctgtttgctgatgttgggggggattccctggcaggtctatttt
caacgggttctttctgcctcttcagctacctacgcccaggtcctttccttcctcgccgcc
tttggctgcttggtcatggctgtgccctcggtcctcataggagctataggggcctccaca
gactggaaccaaactacttatgggtccctccctccaaaggataaggaggaatcagacatg
atccttcccatagtgcttcagcacctctgcccaccctacatctccttctttggtctgggg
gcagtgtcagctgcggtcatgtcatcagcagactcgtctatcctctcagccagctctatg
tttgctaggaacatctatcagctcgcctttcgacagtcggcctcagatcgtgagattgtt
tgggtgatgcgcctcaccatctttgtattcggcgctctcgccactgctatggcattgtta
acaggatcagtatatggcttgtggtacctgagctctgacttggtctatgtcatcatcttt
ccccaacttctcagtgtgttattcgtcaagggcaccaatacctatggctctgtggctggc
tatatctttggtcttttgctgcgcattggtggaggggagccctacctcaaactccccccc
ttcatctactaccctggctgggtgacccaggagagggtccaccacctcactggtgatgta
gagtactttgtccagcaaaggttcccattcaagtctgtgtccatggtggcatccttcttg
gcaaatgtggccttctcttacctgacaaagtacctatttgaaagtggtatgctttcacac
aagtacgacttcctggatgctgtggtgtccaaacatagcaaagagatcatggacaaggct
acgctggtgagcaaccacgataatatcattctttcagaaatggcgcccgttaggcaggcc
ctgggcacatcactggctggaaccttcctcaacactgaggtcctcagtgatgatggggca
tccagtcctgaggcttttcacaatgaaaactag
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