Lates calcarifer (barramundi perch): 108900675
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Entry
108900675 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: desmoglein-2-like
KO
K07597
desmoglein 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04382
Cornified envelope formation
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108900675
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108900675
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108900675
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Major cadherins
108900675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
NQRA_N
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
108900675
NCBI-ProteinID:
XP_050924414
UniProt:
A0AAJ8B1U5
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MVMSRVSFPICVLFLFVLQAVAVVRTHARDNLVRNRREWILPPKPLKENVDYTHLESIAK
IRSDFENNGNIRYSLEGVGANQYPFHVFVVDPKTGLIRVTKVLDREFIDTYNLSGVATFT
DGREAEKKIDVRIKVVDENDNSPVFGVTKPMEVDELSPAGTSVMKITATDADEPGNKNSQ
IGYSIVNQNPSDDMFYMTNDGTIYVKKPFLDREKVAQYILTVKGQDLNGEPGGNSATTTV
TINVRDVNDNLPTLEKEEYEGSIEENTEDVEVMRIKAEDLDLEGTDNWEAVFDIVKGNEA
GYFSITTDPKTNEGILMLDKAVDYEDVKDLELGLAVRNKAPPFDGSGATGASGASGATGA
SGGSSWQSGTTFKTYPIKINVKNQPEGPRFDPKVKAIPISEGDHSVNIKDVIGHYPAIDG
DTGKPAENVRYAKGSDPDNWLTIDPKTADIRLNKIPDRESPFLVNGTYMAKVLCISEDMP
GKTATGTIAIQVEDFNDHCPKLTSDIQTMCTMDDNVIVNAKDEDAFPNGPPFHFSIVPEG
TEGKWHIERLNDTAAILRAEETLWPGSYEVEFEVKDEQGEACPEPQKVKVQVCTCEDGVV
CGKRGSNGQPSKGVELGPAGIGLLFLGLLLLALIPLLLLFCQCGGAGGLPGGFTEMPFDT
KSHLINYRTEGQGENTEVPLLPTQMDGDMNVDMGMASKTLAMNSMAGLGLQKSVTSMDGM
NGATYGEGFVSDHREGTWGMNQLSGSGFYSEFEGRESGGGGGIYDVMALPDHFLAQYYTQ
KVNNGNENPGVKDALLVYDYEGQGSSAGSVGCCSLLESDNDLQFLDDLGPKFKTLAEVCG
GKMIPTEVKQVFTPLPSASINTQISESNLMTGPQLPLAPQPQPTVPKTEQTTVVREKSER
SQTVKESMAMVRGEMANQGQMLMLQQQHPVYYTTAPVMQPMHYVVQPQVQNTMLLAEAPA
TNLQGMVLVNGTQTVPAQGMVVHGQTVLSSGQSQGPSMVLVERSRIQGGGTNLINTGNLS
SPQTMMIVEGKVPAGSMEVLKGSQTCLVQAGTLQAGGLSGSQRVLVVGGSTTNGGQLVQE
AGGLSKNSDVSGAQRAHYRKGNMSTGPQSSVMASSTTMVSTTPNYHKVQETREIERSVM
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgtctcgggtttcttttcccatttgtgtcctgttcctgtttgtgctccaggct
gttgctgtggtgaggacccacgctcgagacaatctggtaagaaacagaagagaatggatt
ctccctccaaaacctctgaaggaaaatgtagactacacccacctggaatctattgccaag
attcgatcagattttgaaaataatggaaacattcggtactccctggaaggtgttggtgcc
aaccagtatcccttccatgtgtttgtagtggaccctaaaactggactaattcgtgtgacc
aaagtccttgacagggagttcattgatacatacaatctgtctggtgttgctacattcact
gatggcagggaagctgagaaaaaaattgatgtacgaatcaaggttgtagatgagaatgac
aactctccagtgtttggagtcacaaagcccatggaggtggatgagctcagtcctgcaggg
acttcagttatgaaaatcactgcaactgatgctgatgaaccagggaataagaactctcag
atcggctactccattgtgaatcagaatccatctgatgacatgttctacatgaccaatgat
gggaccatctacgtcaaaaagcctttcctggacagggagaaagtagctcaatacatcctg
acagtaaaaggtcaagacctaaatggtgaaccaggaggaaacagtgcaaccaccactgtc
accattaatgtccgagatgtgaatgacaacctccccactctggagaaagaggagtatgaa
ggcagtattgaggagaatacagaggatgtggaggtgatgagaatcaaagcagaggacctg
gacctggagggaacagacaactgggaagctgtatttgatattgtcaaaggcaatgaggcc
gggtacttcagcattacaacagaccccaaaaccaatgagggcatcctaatgcttgacaag
gctgtggattatgaggatgtgaaggaccttgaactaggactagctgtgagaaacaaggcc
ccaccatttgatggatcaggtgcaactggtgcgtctggtgcatctggtgcaactggtgca
tctggaggatcatcatggcaaagtgggaccacatttaaaacctatccgatcaaaatcaat
gtgaagaaccagcctgaggggccacgttttgaccccaaagtcaaagctattcccatctca
gaaggagaccactcagtcaacattaaagatgttattggtcactaccctgcaatagatgga
gacactgggaaaccagctgaaaatgtcaggtatgctaagggctcagaccctgacaactgg
ctaaccattgacccaaagacagctgacatcagactcaacaagatacctgacagagaatct
ccattcctggtcaatgggacatacatggctaaagtgctctgcatttcagaagacatgccc
gggaaaactgccactggtaccatagccatccaggtggaagattttaatgaccactgcccc
aaactgaccagtgacattcagactatgtgtaccatggatgataatgttattgtgaatgct
aaagatgaggatgcattccctaatggacctccttttcacttcagcattgtcccagaaggc
actgagggcaagtggcacattgaacgcctcaatgacactgcagctatcctgagggccgag
gagaccctgtggcctggttcctatgaggtggaatttgaggtgaaggatgagcagggagag
gcctgtccagaaccacagaaagtgaaggtccaagtttgtacatgtgaggatggagtggtg
tgtggaaaacgaggcagcaatggtcagcccagcaaaggagtggagttaggacctgctggg
atcggactgctattcctgggtctgctgctattagcgctcattcctctgttgctgctcttc
tgccagtgtgggggggctgggggtctgccagggggctttactgagatgcctttcgacacc
aaatcacacctcattaactaccgcaccgagggccagggagagaacacggaggtgccactc
ctgccaacacaaatggatggagatatgaatgtggatatgggcatggccagcaaaactttg
gcaatgaactccatggcaggtttgggtctccagaaatcagtcacttccatggatgggatg
aacggggccacctatggagaaggttttgtaagtgaccacagagaaggcacatgggggatg
aaccaactgagcggcagtggcttctactctgagtttgaaggcagagaatcaggaggtggt
ggaggaatttatgatgtaatggctctaccagaccacttcctggcacagtactacactcag
aaggtgaacaatggaaatgagaaccctggagtgaaggacgctctgttggtttatgactat
gagggacagggttcctctgctggctcagtgggctgctgcagcctcctggagtctgacaat
gacctgcagttcctcgatgacctcggaccaaagtttaagaccctggctgaggtgtgtggc
ggcaagatgatcccaactgaagtcaaacaagtgttcactcctctgcccagtgcctccatc
aacactcagatctcagaatcaaatttgatgactggcccacagctgccccttgcaccccag
ccacagccgactgtccccaaaacggagcagactactgtggtcagggagaaatctgagcgt
tctcagacagtgaaggaaagcatggccatggtgaggggagagatggcaaatcaaggtcag
atgctcatgctacagcagcagcaccctgtgtactacaccactgcccctgtgatgcagcca
atgcactatgtagtccagccacaggttcagaacaccatgctgctggctgaggcaccagcc
accaacctgcagggcatggtactggttaatggcacccagactgtacctgcccaaggcatg
gttgttcacggacagacagtgttgtctagtggacaatcccagggccccagcatggtcctg
gtggagaggagcaggatccaggggggcggtaccaacctgatcaacactggaaacctttct
agcccccagaccatgatgattgtggagggtaaggttcctgcagggtcaatggaagttctg
aaaggaagtcagacctgccttgtgcaagcaggtactctacaggcaggagggttgtctgga
tctcagagagttctggtggttggagggtcgacaactaatggagggcagctggtgcaggag
gcaggaggtctgtccaagaatagtgatgtctctggtgctcagagagcccactacagaaag
ggcaacatgtctactggtcctcagagcagtgtgatggcttcctctaccaccatggtgagc
acaacccccaactaccacaaagtgcaggagaccagagaaattgagagaagtgtgatgtga
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