Lates calcarifer (barramundi perch): 108900722
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Entry
108900722 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: spectrin alpha chain, non-erythrocytic 1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04210
Apoptosis
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
108900722
09142 Cell motility
04820 Cytoskeleton in muscle cells
108900722
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108900722
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108900722
Intermediate filaments
Intermediate filament-binding proteins
108900722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
EF-hand_8
SH3_2
SH3_3
SH3_10
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
108900722
NCBI-ProteinID:
XP_018557418
UniProt:
A0AAJ7QJ03
LinkDB
All DBs
Position
LG9:complement(22325244..22368763)
Genome browser
AA seq
2479 aa
AA seq
DB search
MDTAGVKVLETAEDIQERRQQVLDRYRRFKELSIMRRQKLEDSYRFQFFRRDADELEKWI
QEKLQIASDENYKDPSNLQGKLQKHQAFEAEVQANAGAIIKLDETGNLMISEGHFASETI
RTRLEELHRLWDLLLQRTKEKGMRLLQAQKLVQYLRECEDALDWISDKEAMATSEELGQD
LEHVELLQKKFEEFQTDLAAHEERVNEVNQLAAKLIQETHPEAELIVRKQDEVNAAWQRL
KGLAQQRQGKLFGAAEVQRFNRDVDETISWIKEKEQLMASDDFGRDLASVQALLRKHEGL
ERDLAALEDKVNTLGGDAERLQQTHPQNATQIHLKKDELITNWEQIRTLAAERHARLNDS
YRLQRFTADFRDLTSWVTEMKALINADELANDVAGAEALLDRHQEHKGEIDAHEDSFRAT
DEAGQALLNTGHYASEEVKEKLGILAEEKESLLELWEVRRQQYEQCMDLQLFYRDTEQVD
NWMSKQEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNNHYA
KDDVATRRDALLSRRNALHERAQSRRAALEDSFHLQQFFRDSDELKSWINEKMKTATDEA
YKDPSNLQGKVQKHQAFEAELSANQSRIDALQKSGQELLDRKHYASTEVAGRMEEVSSQW
KKLLEATELKGIKLREANQQQQFNRNVEDIELWLYEVEGHLASDDYGKDLTSVQNLQKKH
ALLEADVAAHQDRIDGITIQARQFQEAGHFDADNIRKKQEALVVRYEALREPMAARKQKL
SDSLRLQQLFRDVEDEETWIREKEPIAASTNRGKDLIGVQNLLKKHQALQAEITGHEPRI
KAVTLKGEAMVEEGHFAGEDVKAKLAELHGRWDMLKAKASQRRQDLEDSLQAQQYFADAN
EAESWMREKEPIVGSTDYGKDEDSAEALLKKHEALMSDLNAYSSSIQALKEQAQSCRQQV
APTDDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY
VKKLDPTQSSSRENLLDEHGSIALRQDQIENQLVTKEACSVSVRMKQVEELYGTLIELGE
KRKDMLEKSCKKFMLFREANELQQWINEKESALTNEEVGSDLEQVEVLQKKFDDFQKDLK
ANESRLRDINKVASELESEGLMAEEAPMVQAQQQELLGSAPGKDEADSKTASPWKNIRLA
VQTTANFNTIKELNNRWRSLQQLAEERSNMLGSAHEVQRFHRDADETKEWIEEKNQALNT
DNYGHDLASVQALQRKHEGFERDLAALGDKVNSLGETAERLIQSHPEAVDDIQEKCTELN
TAWSSLVGRADQRKDKLGNSHDLQRFLSDFRDLMSWINGIRGLVSSEELAKDVTGAEALL
ERHQEHRTEIDARAGTFQAFEQFGQQLLARGHYASPEIQQKLEALDRERADLEKAWVQRR
MMLDQCLELQLFNRDCEQAENWMAAREAFLASDDKGDSLDSVEALIKKHEDFDKAINVQE
EKIAALQSFADQLIGADHYAKPEIFNRRNEVLDRWRRLKAQMIEKRSKLGESQTLQQFSR
DVDEIEAWISEKLQTATDESYKDPTNIQLSKLLSKHQKHQAFEAELHANADRIRGVIDTG
NALIQRGACAGSEDAVKARLSALDEQWQFLVNKSAEKSQKLKEANKQQNFNTGIKDFDFW
LSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNGQADSLMVSSAFDTS
QVKDKRDAVNGRFAKLKNMAAGRRAKLNESHRLHQFFRDLDDEESWIKEKKLLVSSEDYG
RDLTGVQNLRKKHKRLEAELGAHEPAIQSVLDTGKKLSDDNTIGQEEIQQRLAQFVDHWK
ELKDLSGARGQRLEESLEYQQFVANVEEEEAWINEKLNLVGSEDYGDTLAAVQGLLKKHE
AFETDFTVHRDRVNDVCANGEELIKKNNHHVDNISAKMSALRGKVSELERAAAQRKAKLD
ENSAFLQFNWKADVVESWIGEKENSLKTDDYGRDLSSVQTLLTKQETFDAGLQAFQQEGI
TNITALKDQLLAAKHVQSKAIEARHAALMKRWNQLLSNSAARKKKLLEAQEHFRKVEDLF
LTFAKKASAFNSWFENAEEDLTDPVRCNSLEEIRALREAHEAFRSSLSSAQADFNQLAEL
DQQIKSYQVVSNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQEENDKLRQEFAQH
ANAFHQWLQETRTYLLDGSCMVEESGTLESQLEATKRKHQEIRAMRSQLKKIEDLGAAME
EALILDNKYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNTTGVTEEALKEFSMMFK
HFDKEKSGRLNHQEFKSCLRSLGYDLPMVEEGEPDPEFEAILDTVDPNRDGNVSLQEYMA
FMISRETENVKSSEEIESAFRALSTENKPYVTKEELYQNLTKEQADYCLSHMKPYLDSKG
RELPSAFDFVEFTRSLFVN
NT seq
7440 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgcaggggtcaaagtgctggagacagctgaggacattcaggagcgccggcag
caggtgctggaccgctaccggcgtttcaaggagctgtcaatcatgcgccggcagaagctg
gaagactcttaccgcttccagttcttccgccgtgacgctgatgagttggagaagtggatc
caggagaagctgcagattgcctctgatgagaactacaaggacccctctaacttgcagggt
aagctacagaaacatcaggcctttgaagctgaagttcaggccaatgctggggccattatt
aaactggacgagactggaaaccttatgatcagcgagggccacttcgcctctgagaccatt
cgaactcgtctggaggaactgcatcgcctatgggacctcctgctgcaaagaaccaaggaa
aaaggcatgcgtcttctacaggcgcagaaactggtccagtacctgcgtgagtgtgaagat
gccctggactggatcagtgataaggaggccatggccacctctgaggagctgggccaggac
ctggagcatgtggagctcctgcagaagaaatttgaagagtttcagacagacctggcagcc
catgaggagcgtgtgaatgaggtgaatcaactggcagccaaactgatacaggagacccat
cctgaggctgagctcatagttcgcaagcaggatgaggtcaatgccgcctggcagcgtctg
aagggcctggcacagcagaggcagggcaagctgtttggggctgctgaggtgcagcgtttc
aacagggatgtggatgagaccatcagttggatcaaggagaaggagcagctgatggcctct
gatgactttggtcgtgatctggccagtgtgcaggctctgctgcgtaaacatgagggtctg
gagagagaccttgctgctctagaagataaggtcaacacactaggtggtgatgcagagcgc
ctgcagcagacacatccccaaaatgccacccagattcacctgaagaaggacgaactcatc
actaactgggaacagattcgcactctggctgctgagcgccatgctcgcctgaatgactcc
taccggctgcagcgattcactgctgacttcagggatctgaccagctgggttacagagatg
aaggccttgatcaatgctgatgaactggccaatgatgtggctggagctgaggctctacta
gatcgccatcaggaacacaagggagagattgatgcccatgaagacagttttagagccact
gatgaagctggccaggccttgctcaatacagggcactatgcctctgaagaggtcaaggag
aagctgggcatccttgctgaggagaaggagtctctgctggagttgtgggaggttcgcagg
cagcagtatgagcagtgcatggacctgcagcttttctacagggatactgagcaagttgac
aactggatgagtaaacaagaggctttcctcctgaatgaagaccttggtgactccctggac
agtgtagaggcattgttgaagaaacatgaagactttgagaagtcacttagtgcccaggaa
gagaagatcactgccctggatgagtttgctaccaaactgatccagaacaaccactatgcc
aaagacgatgtggctacccgcagagatgctcttctcagccgccgcaacgctctgcatgag
cgtgctcagtctcgtcgtgctgctttggaggactctttccacctgcagcagttcttcagg
gattctgatgagctcaagagttggatcaacgagaagatgaagaccgcaactgatgaagct
tacaaggacccctccaacttacagggcaaggtgcagaaacaccaggcttttgaggctgag
ctatcagctaaccaaagccgcattgatgctctgcagaagtctggccaggagctgctggat
agaaagcattacgcctccactgaggtggctggccgcatggaggaggtcagctctcagtgg
aagaaactgctggaggctactgagctcaaaggcatcaagctccgcgaggccaaccagcaa
cagcaattcaacaggaatgtagaggacatagagctgtggttgtatgaagttgagggccac
ctggcttcagatgattatggaaaagacctgaccagtgtccagaacttgcagaaaaaacat
gcactgctggaggcagatgtggctgctcaccaggatcgcattgatggcataacaattcag
gcacgccagttccaggaggctggacattttgatgctgacaacatccgcaaaaaacaggag
gctttggttgtccgttatgaagccctccgtgagcccatggctgcacgcaagcagaaactg
tccgactctctaaggcttcagcagctgttcagagatgtggaggatgaagagacttggatc
cgtgagaaagagcccatagctgcctctaccaacagaggcaaagacctgattggtgtccag
aacttgctgaagaagcaccaggcccttcaggctgaaatcactggtcatgagcctcgcatt
aaggctgtcaccctgaaaggagaggccatggtcgaggaagggcactttgctggtgaggat
gtgaaagctaagctagctgagctacatggacgctgggacatgctgaaggctaaagcctcc
cagaggagacaggacctggaggactcattgcaggcccagcagtactttgctgatgccaat
gaggctgagtcttggatgagggagaaggagcccatcgtagggagcactgactacggcaaa
gatgaagactctgctgaggctctgctgaagaagcacgaagctctgatgtctgacctgaat
gcctacagcagcagcatccaggccctgaaggaacaggcccagtcctgcaggcaacaagtg
gcaccaactgatgatgagactgggaaagagctggtcctagccttgtatgactaccaggaa
aaaagccctcgtgaagtaaccatgaagaaaggggacatcctcaccctactcaacagcacc
aacaaggactggtggaaagtggaggtgaatgatcgccagggctttgttcctgctgcttac
gtgaagaagctcgaccccacccagtcctcatccagggaaaatctactggatgaacatggc
agcattgcactgcgtcaagaccagatagagaatcagcttgtcaccaaggaggcctgcagc
gtgtcagtgcgcatgaagcaggtggaagagctgtatggtactctgatagagcttggagag
aaacgcaaggacatgttagagaagagctgcaagaagtttatgttgttccgtgaagccaat
gagctccagcagtggatcaatgagaaggagagtgccctcactaatgaagaggtgggctct
gacctggagcaggttgaggtcctgcagaagaagtttgacgacttccagaaggacctgaaa
gccaatgagtctcgtctgagggacatcaacaaagtggcgtctgagctggagtctgaaggc
ctcatggctgaggaggcccccatggttcaggctcagcaacaagagttacttggttcggct
cctggcaaggatgaagcagattccaagactgcatctccatggaagaatatacgcttggct
gttcaaacaacggctaactttaatactatcaaggagctgaataaccgctggcggtcactg
cagcagctggctgaagaaaggagcaatatgctgggcagtgcccacgaggtgcagcgattt
cacagggatgctgatgagactaaggagtggattgaggagaagaaccaggccctcaacact
gacaactatggccatgacttggccagtgttcaggctctgcagcgtaaacatgaaggtttt
gaaagagacctggcagctcttggtgataaggtgaactctcttggtgagacagcggagcgt
ctgatccagtcccacccagaggcagtggatgacatccaggagaaatgcactgaacttaac
actgcctggagcagcctggtaggacgtgctgaccagcgcaaagacaaacttggcaactcc
catgacctgcagcgcttcctctctgatttcagagatctgatgtcctggattaatggcatc
cgagggctagtgtcctcagaggaactggccaaagatgtgactggagctgaggcccttctg
gaaagacaccaggaacaccgcacagagatcgatgctcgtgctggtaccttccaggccttt
gaacaatttggtcagcagctgctggcacgaggccactatgccagtcctgagattcaacag
aaactggaggctctagaccgtgagcgtgctgacctggagaaggcctgggtgcagcggcgt
atgatgttggaccagtgccttgaactccagctcttcaacagggactgtgaacaggctgag
aactggatggcagctcgtgaagcctttctcgccagtgacgacaagggcgactccttggac
agtgtggaagccctcatcaagaaacatgaagactttgacaaggccattaatgtgcaggag
gagaagattgctgctctgcagtcctttgctgatcagctgattggagctgaccattacgcc
aaacccgagatcttcaaccgccgcaatgaagtccttgacaggtggcgccggctgaaggcc
cagatgattgaaaagcggtctaagttgggtgaatcacagactttgcagcagttcagcagg
gatgtggatgagatagaggcttggatcagcgagaagctgcagactgcgactgatgagtcc
tacaaggaccctactaacatccagctgtccaagctgctgagtaagcatcagaaacatcag
gcatttgaggctgagctgcatgccaacgcagacagaatccgtggagtcattgatactggc
aatgccttgatccagagaggggcctgcgccggcagcgaggacgcagtcaaggcgcgcctc
agtgctctggatgaacagtggcagttccttgtcaacaaatctgcagagaagagccagaaa
ctcaaagaggccaacaagcagcagaacttcaacacaggcatcaaggactttgacttctgg
ctctctgaggtggaagcgctccttgcttctgaagattatggtaaagatctggcctccgtc
aacaacctgctgaagaaacaccagctgctggaggctgatatttctgcccatgaggatcgt
ctgaaggatctgaacggccaggctgacagcctgatggtcagcagtgcctttgacacctca
caggtgaaggacaagcgtgatgctgtcaatggccgcttcgccaagctcaagaacatggct
gccggcagacgggctaaacttaatgagtcccatcgactgcatcagttcttcagggacctg
gatgatgaagagtcttggatcaaagaaaagaagttgcttgtgagttcggaggactacgga
cgtgatttgacaggtgtacagaatctgaggaagaaacacaagagactggaggctgagctg
ggagctcatgagccagccattcagtcggtgctggacacagggaagaagctatctgatgac
aacaccattggccaggaggagatccagcagaggctcgcccagtttgtcgaccactggaag
gaactcaaagacttatctggggcaaggggacagaggctggaggagtcgctggagtaccag
cagtttgtggcaaatgtggaagaggaagaagcttggattaatgagaagttgaatctagtg
gggagtgaggactacggtgatacactagctgctgtgcagggcttgctgaaaaagcatgaa
gcatttgagactgacttcactgtgcacagggacagagtcaacgatgtgtgtgctaatgga
gaggagctgattaagaagaacaaccatcatgtggacaacatcagtgccaagatgtcagct
ctgcgaggaaaagtatctgagctggagagggcagcagctcagaggaaggccaagctagat
gaaaactctgccttcctgcagttcaattggaaggccgatgtggtggagtcctggattggt
gagaaagagaacagcctgaagaccgatgactatggcagagacctgtcctctgtgcagact
ctgctcactaagcaggagacatttgatgccggtctccaggccttccagcaggagggcatc
acaaacattacagctctaaaggaccagctgctggctgccaagcacgtccaatcaaaagcc
attgaagctcgtcacgctgccttgatgaaacgctggaaccagctgctgtccaactctgct
gctcgcaagaagaaacttctggaggctcaggagcacttcagaaaggttgaagacttgttt
ctgacatttgccaagaaggcgtcagccttcaacagctggtttgagaatgcggaggaggat
ctgacagatccagtgaggtgcaactctctggaggagatacgggcactgcgtgaagcccat
gaggccttccgctcctcactgagctctgctcaggctgactttaaccagctggccgagctg
gatcagcagatcaagagctatcaggtggtatccaacccttacacttggttcaccatggag
gccctggaggagacctggagaaacctgcagaagatcatcaaggagcgagagctggagctg
cagaaggagcagaggagacaggaggaaaacgacaagttgcgtcaggaatttgcacagcat
gccaacgctttccaccagtggctccaggagaccaggacatatcttctggatgggtcgtgt
atggtggaagagtctggtaccctggaatcccagttggaggcgaccaagcgtaagcaccag
gagatccgggccatgcgcagccagttgaagaagattgaagatctgggggcagctatggaa
gaagcactgatcttggacaacaagtatacagagcacagcacagtgggcctggcccagcaa
tgggaccaactggaccaactgggaatgaggatgcagcacaacctggagcaacagatacag
gccaggaacaccactggagtgacagaggaggctctgaaggagttcagcatgatgtttaag
cactttgacaaggagaagtctggccgtctgaaccatcaggagttcaagtcgtgtctgcgt
tcgctgggctacgacctgcccatggtggaagaaggagaacctgatcctgagtttgaggcc
atactcgacacagtggatcccaacagggatggaaacgtgtcgttgcaggaatacatggcg
ttcatgatcagccgcgagacagagaacgtcaaatccagtgaggagatagagagcgctttc
cgagctctcagcactgagaacaaaccttacgtcactaaagaagagctctaccagaacctg
accaaggagcaggcggactactgcctctcacacatgaagccctacctcgacagcaagggc
cgcgagctgccgtcagctttcgactttgtcgaattcacccgctcgctcttcgtcaactaa
DBGET
integrated database retrieval system
