Lates calcarifer (barramundi perch): 108900724
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Entry
108900724 CDS
T04895
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108900724
03036 Chromosome and associated proteins [BR:
lcf03036
]
108900724
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108900724
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
108900724
SLIK complex
108900724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
108900724
NCBI-ProteinID:
XP_018557421
UniProt:
A0A4W6DPK6
LinkDB
All DBs
Position
LG9:22188300..22214247
Genome browser
AA seq
1797 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASGSGSGSSSSSSSSSSQSGSSDSGSGSDS
GSQSDSDTEKSKEKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQLQQRQSS
SNSGSDEDSSSSDESDSSSGSKRKRNSGSSESGSGSGSESGSGSDSSAEDNSDETASDYE
PSHKIKSRKPPTKMNFRNGKKSSTQRKKGKKSSSSEDEDDNYKKVASAGPRRQATVNISY
KEDEELKTDSDDVVEVLGEDVPQPEEDEFETLERVMDSRIGRKRATGSATTVYAVEADGD
PNFNFNPNKEAGEIQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLDNFKKKEQEKKKW
LKAASPEDIEYFNCQEELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECS
WEDGALIAKKFQKCIDDYMSRNQSKTIPSRDCKVLKQRPRFVPMKKQPAYIGGDGLELRD
YQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTICFLNYLFNEHQLYGPFLLVVPLSTLT
SWQREIQLWAPQMNVVVYLGDISSRNMIRTHEWMHVHNKRLKFNILLTTYEILLKDKSFL
GNVNWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFHSWELFEDEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQK
QYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFLNRAEALQQL
IRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLRSRQFLFQRLDGSIKGEMR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KRQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVAN
FSMMEDEEIDIDSERSQRSWDDIIPEEQRRRMEEEERQKELEEIYMLPRMRNCAKQISFN
AVEGRQSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFNDAEIRRFVKSYKKFGG
PLERLDAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPDKTSGGRRGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSSLL
IGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEA
QKQAGTANSRKRKPRSKKSKTLKPTKTDEAMKSPSSDPPSDKRSDDEDEIKEEKEAALVK
PPSRRSRADRVVLKEEEDEDDDDEEEEEPEQEEVSSSGEREVKEKEIKKEGKKKEESWDM
KETKEPKEKKETKPLEPVHKQEESMDKNEVKPEVRTKKASDVPLHITASGENVPISEESE
ELDQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSN
PDQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSINTHGYKHAD
VEKLKDNSHQDESSRDSYSSERHQTSGRHHESSSSKERHSSESHRKTAGGESRKRPYSSF
SNGKDHRDRDHYRPDSRDRDRQDRYYNDSKHRKLEEFRTSRDHRLDMKDYSHSDQRSSYR
YHSDWQTEQRASACGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggatgaaagtgtaagcaacagcagtggagaatcaagcaattct
gatgatgagtccggttctggatcgggctccgcatcggggtccggctcaggctccagttcc
agctcctccagcagcagcagccagtcaggaagcagtgactcaggaagtggctctgactct
ggcagccagtcagactctgacacagagaaatccaaggagaagatggaaccaccaaataaa
tcaaacattgatggagctgagttctggaaatccaacccaagtattctagcggtgcaacgg
tctgctatgctcaggaaacagcagcttcagcagcagcaactgcagcagagacaaagctcc
tcaaatagtggatctgatgaggactcttcaagtagcgatgaatctgactcatcaagtgga
tccaaaaggaaaagaaattcaggctcctctgaatctggatctggttctggatctgagagt
ggttctggatcagactcatcagcagaggacaacagtgatgaaacggcatcagactatgag
cccagtcacaaaatcaaaagcagaaaacctccaaccaagatgaattttcgtaatgggaag
aaaagcagcacccagaggaagaaaggcaagaaaagctcttcctcagaggatgaggatgat
aactacaagaaggtggcatctgctgggccacgacggcaggccacggtcaacatcagctac
aaggaggacgaagaactgaagacagactcggatgatgtggtggaagttttgggtgaagat
gtcccgcagcctgaggaggatgagtttgaaacactggagagagttatggacagcaggata
ggaaggaaaagagcaacaggaagtgcaaccactgtatatgctgtagaagcagacggggac
cccaatttcaacttcaatcctaacaaagaggctggagagatccagtatttgataaagtgg
aagaactgggcccatatccacaacacctgggagacagaggagacactcaagttgcagaat
gttaagggcatgaagaaactggacaatttcaagaagaaggaacaggagaaaaagaaatgg
ttaaaggcagcttcaccagaggatatagaatatttcaattgtcaggaggaattgatggat
gacctgcactctcagtaccagttagtagaacgaattataggccattcaaaccagaagtca
gcagctggttacccagactacctgtgcaagtggcagggcttaccatactcggagtgtagt
tgggaggatggtgctttgattgccaaaaagttccagaaatgcattgatgactatatgagc
agaaaccaatccaagaccattccatccagagactgcaaggtgctgaaacagagacccagg
tttgtgcccatgaagaagcagcctgcttacataggaggcgatggactggagcttcgagac
taccagctggacagtttgaactggatggcccactcctggtgcaaaggcaacagttgcatc
cttgctgatgagatgggtttaggaaagaccatccagactatctgcttcctcaactacctg
tttaatgagcaccaactgtatgggcccttcttgctggttgtgcctctctctacacttacc
tcctggcagagagaaatccaactctgggcccctcagatgaatgttgtggtctacctggga
gacatcagcagcagaaacatgatcaggacacatgagtggatgcatgtccacaacaagaga
ctgaaatttaacatccttctcacaacatatgagattcttctcaaagacaagtcatttttg
ggcaatgtaaactgggccttcatcggtgtggatgaggcacatcgactgaagaatgatgac
tccctcctctacaagaccatgatcgatttcaagtccaatcacagacttctgatcacagga
acaccactgcaaaactccctgaaagagctctggtccctgctgcacttcattatgccagag
aagtttcactcttgggagctgtttgaggacgagcatggtaaaggtagagactctggctac
actagtctacacaaagaactggaaccttttctactgcgcagagtcaagaaggacgtcgag
aaatcccttcctgccaaagtggaacagatcctcagagtcgagatgagtgctatccagaaa
cagtattacaaatggatcctgaccaggaactacaaggctctgagtaaaggtaccaaaggc
agcacatcaggtttcctgaacatcatgatggagctgaagaagtgctgtaaccactgttac
cttatcaagcccccagaggacaacgagttcctcaacagggctgaagccttacagcaactg
attcgcagcagtgggaaactggttctgttggacaaacttctggtgcgtttgaaggagcga
ggccacagagtgctcatcttctctcaaatggtgcggatgctggatatcctggctgaatac
ctcaggagccgacagttcctctttcagagattagatggctccatcaaaggggaaatgagg
aagcaggcattggaccactttaatgctgagggttcagaggatttctgcttcttgttatca
acacgtgcgggtggtctgggtatcaatctggcatcggctgacacagtagtcatctttgac
tcagattggaacccccagaatgatctgcaggcccaggccagagcccacagaattggacag
aaaagacaggtgaatatctaccgtctggtgacaaagggctcagtggaggaagacatcatt
gagagggcgaagaagaaaatggtgctcgaccatcttgtcattcagaggatggacaccact
gggaaaactgtcctccatactggtgctgctccctccagttctgcacctttcaataaggag
gagctttctgccatcctgaagtttggtgctgaggagcttttcaaagaaccagagggtgag
gagcaggagcctcaggaaatggacattgacgagatcctcaaaagagcagagaccagggag
aatgaccctgggccctccacagtgggagaagaactgttgtctcagttcaaggtggccaac
ttctccatgatggaagatgaagaaatagacattgactctgagcgtagtcagcggagttgg
gatgatattattcctgaagagcagaggaggaggatggaggaggaggagagacagaaggag
ctggaggaaatctacatgctgccgcgcatgagaaattgtgccaaacagataagctttaat
gctgttgagggccggcaaagcagaaacagaaggtactctgggtccgatagtgactctccc
tcagacagaaagaggccaaagaaacgaggacggcctcgaaccattccacgggaaaatatc
aagggtttcaatgatgctgagatccggaggtttgtcaagagttataaaaaatttggtgga
cccctggaaaggttggatgctattgctcgtgatgctgaacttgtggataagtctgaacat
gatctgaaacgcttggcagagacggttcacaacggctgtgtgagaacactacgagaaaac
ccctgtgggccagacaagacctcaggaggcagaagaggaaaggtaaaaggccctacattc
aggatctctggagtccaggtgaatgccaagcttgttatctcccatgaggaagagctggct
cctctccacaaggccattcctgctgaccccgaggagagaaagaagtatatgattccatgc
cactcgaaggcagcacactttgacattgagtgggggaaggaggatgactccagcctcctc
ataggaatctatgagtacggttatggcagctgggagatgatcaaaatggacccagacctc
aatctcacacacaagctcctaccagatgaccctgacaagaagccacaggccaaacagcta
cagaccagagcagactacctcatcaagcttctgagcaaagacttggcaaaaaaagaagca
cagaaacaagcagggacagccaattcacggaagaggaaaccaagaagtaaaaaaagtaaa
actctgaaaccaacaaagacagatgaggcgatgaagagtccatcctcagatcccccatca
gacaagaggtcagatgatgaggatgaaattaaggaggaaaaggaggcggcactagtgaag
ccaccaagcagacggagtcgagcagacagggtggtgttgaaggaggaggaggacgaagac
gatgatgacgaggaggaggaggagcctgagcaggaggaggtctcttcttcaggggagagg
gaggtcaaagagaaagagatcaaaaaggaaggcaaaaagaaggaggaaagttgggatatg
aaagaaacaaaggagccaaaggaaaagaaagaaacaaagccactggagccagtacataaa
caagaggaaagcatggacaagaatgaggtgaaacctgaggtacggacaaagaaagcctcc
gatgtgccgctccatataacagcaagtggagagaatgtgccaatatctgaggagtctgag
gagctggaccagaggaccttcagtgtgtgtaaagagaggatgcggccagtgaaagcagca
ctgaagcagctggaccgaccagagaaagggctgtcggagcgcgagcagctcgagcataca
agacagtgcctcattaagattggagaccacatcactgagtgtctgaaggagtattcaaat
cctgaccagatcaaacagtggagaaaaaacctgtggatatttgtttccaaattcactgag
ttcgatgccaggaaactacataaactgtataaacatgccatcaaaaaaagacaagagaac
gcccaggcaatggaacagaacactagaagtattaacacacatggctacaaacatgcagat
gttgaaaagctgaaggacaactctcaccaggacgagagcagcagggacagctacagttca
gaaaggcatcagacttcaggtcgacaccatgagagcagcagcagcaaggagagacacagc
tcagaatcacacaggaagactgcaggaggagagtccaggaaaagaccatactcctccttc
agcaatggcaaagaccaccgagacagagaccactacagaccagacagcagggacagagac
agacaggacagatactacaatgacagtaagcacaggaagctggaggaattccgcaccagc
agagaccaccggctggacatgaaggattattcccactcagaccagcgctcttcctaccgc
taccactcagactggcagacggagcagcgagcttcagcctgcgggccccgttctccccga
gaccagcgctcaccttacgactcccgctcacccatggggcaccgctcacctttcgactac
tcgtcagaccacaagagcacacctgagcagatctggagcagccgcaagacataa
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integrated database retrieval system
