Lates calcarifer (barramundi perch): 108900931
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Entry
108900931 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: tripartite motif-containing protein 59
KO
K12028
tripartite motif-containing protein 59
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108900931
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108900931
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-C3HC4
RING_XB3-XBAT31
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
BAR_3_WASP_bdg
zf-RING_10
zf-RING_6
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
108900931
NCBI-ProteinID:
XP_018557726
UniProt:
A0AAJ7QJC5
LinkDB
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Position
LG21:13472252..13475708
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AA seq
424 aa
AA seq
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MDNLEEDLTCSVCYSLFSDPRVLPCSHTFCKTCLDNLLQVSTNYSIWRPLRVPLKCPNCR
SVMELPPAGVEALPTNVSLRAIIEKYQRDSDPRPPSCPEHNRQPLNMYCIRDRQLICGLC
LTVGQHQGHAIDDLQAAFIREKQTPSRLLARLSEQRWVQACELGEQLEQEKARCEGLVRQ
DRQEVNQFFQTLEAVLARKRQAYLEALDKAAAEVSQAYDPLIHRVKELQEEQLDLVSLGS
SVEEEDSPLVFLEKAHLFRERVEEFIKTPLPSVLNLSVNPRAAEYLQQHWPAVTIGSLEE
APIPKVSCCTRCGGAEAEARGDESDPWRELWPTSFVVLLGLLLLLAVLWANPVGGASLGF
SLLSRFSQLVHGLGSELITSVWDTAGSAYTVAEAAVERCGTQLSSVGEKAFQQLAALFKT
LTSH
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggacaacctagaggaggacctgacgtgctcggtgtgctactctctgttctctgaccca
cgagtcttgccgtgctcgcacaccttctgtaagacctgcctggacaacttgctccaggtg
tctaccaactactccatctggcgtccgctccgtgttccgctaaaatgccccaactgtcgc
agtgtgatggagctgcccccggcaggcgtagaagctctgcccaccaacgtatctctgcgg
gccatcatcgagaaataccagagggacagtgacccacgacccccctcctgtccggagcac
aacaggcaacctctgaacatgtactgcatccgggatcggcagctgatctgcgggctgtgt
ctgactgttgggcagcaccagggccacgccatagacgacctgcaggcggctttcatccga
gaaaaacagacgccatcgcgactgctggccagactctctgagcagagatgggtgcaggcg
tgtgagctaggggagcagctggagcaggagaaggcccgctgtgaggggctggtgaggcag
gaccgacaggaagtcaaccagttttttcagacgctggaggcggtgctggccaggaagaga
caagcctacctggaggccctggataaagctgctgcagaggtgtcccaggcctacgaccca
ctcatccacagagtgaaggagctacaggaagaacagctggacctggtgtccttgggttca
tcagtggaggaggaggactcgccgctggtcttcctagagaaggcgcacttgttcagagag
agggtggaggagtttattaaaacccctctgccctcggtgttaaatctctctgtcaacccg
cgggcagcagagtacctgcagcagcactggcccgctgtgaccatcgggagtctggaggaa
gcgcccattcctaaggtgagctgctgcacaagatgcggcggtgcggaggccgaggccaga
ggggatgagtccgacccgtggcgcgagctatggccgacttcttttgtggtgcttctgggg
ctgctgctgctgctggcggtgctgtgggcgaacccggtcgggggcgcgtcgctcggcttc
tcactgttgtcgcggttcagtcagttagtccacggcctgggcagtgaactcatcacgtct
gtctgggacacggcgggatcagcgtacacggtggcggaggcggctgtagagaggtgtggc
acacaactctcctcagtcggggagaaggcttttcagcagctggctgccttatttaaaact
ctgacatcccactga
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