Lates calcarifer (barramundi perch): 108901010
Help
Entry
108901010 CDS
T04895
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108901010
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108901010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
PFF1_TM
Spem1
DUF4810
SieB
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
108901010
NCBI-ProteinID:
XP_018557831
UniProt:
A0A4W6G177
LinkDB
All DBs
Position
LG1:complement(18846926..18871591)
Genome browser
AA seq
1973 aa
AA seq
DB search
MAQLLVPPGPDSFRPFSYESLKAIERRIAEENAKRPKGEKKKRNDENDLKPSRDLEAGKD
LPLVYGDIPKGMVSTPLEDLDPYYCNQKTFIVLNKSKFIFRFNAAPALYLLSPFNPLRRI
SIKILVHSLFSMVIMCTILTNCAFMTLSRPPDWAKNVEYTFTAIYTFESLVKILARGFCI
GKFTFLRDPWNWLDFCVIVMAYVTEFVNLGNFSALRTFRVLRAFKAISVIPGLKTIVGAL
FQSVKKLSDVMILTVFCLSVFALIGLQLFMGHLRQKCVLSPNTNMSDEEWTAYTLNKSHY
YVLPGNRDPLLCGNGSEAGHCPEGYVCLRVGRNPDYGYTSFDSFGWAFLSLFRLMTQDYW
EKLYQQTLRAAGKPYMMFFVLVIFLGSFYLVNLILAVVAMAYEEQSQATIKEAKEKEEEF
QAMMEQLKRQQEEAQAVASGAAAETGEVTDKAGGIESSSDTSKFSSKSAKERRNRRRKKK
EEEGKGADEKIPKSESQDSIRKTHCRFTVNANLLNYNMKCSSAHQSFLSFRGPPFSPRRN
SRTSLFSFRSQAQDACSETDFADDENSIFEDNLSRRGSLFLPRRFDRRSSSISQSSFLPH
LLLPPSGIKHSSVDCNGVVSLVGGNSLPSSPVGLLLPKVTVDMASTGDNADTTDTEYKSA
GGDTNHEFMDLLEGPEARQRAHSIASVITSTMEELEESRQKCHPCWYTFANTFLIWDCCP
TWLKLKKVVKLIVMDPFMDLTITICIVLNTMFMAMDHYPMSNGFSSMLNVGNLVFTGIFT
AEMVLKIIALDPYYYFQEGWNIFDGIIVSLSLMELCLDKVPGMSVLRSFRLLRVFKLAKS
WPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISVDCTLPRW
HMSDFFHSFLIVFRVLCGEWIDTMWDCMEVAGMTMCIIVYMMVMVIGNLVVLNLFLALLL
SSFSADNLAATDDDSEMNNLQIAIGRIHKGIAFTKSLLRSSCNSVCLKEKKKGKGDEKSL
DELHKSLGPNGVPSHVINFPINSNGDVTGVDKNGDKYIVSSKSDDSLSFINNPSLTVTVP
IAVGESDFENLNTEDFSSASSDLAGCHVNVDDDDQYSSSEGSTVDGMAGVERGESIDFEL
EEAMDPDACFPDGCVQKFQCCQVNVDVGWWKVWWTLRKTCFRIVEHNWFESFIIFMILLS
SGALAFEDIYIEKRKTIKTVLEFADKIFTYIFILEMLLKWVAYGFAKYFTNAWCWLDFLI
VDVSLVSMVANAMGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIFNVL
LVCLIFWLIFSIMGVNLFAGKYSHCVNKTNVPYLRSIVKNKIECEALNHTGALWKNVKIN
FDNVGMGYLALLQVATFKGWMEIMYAAVDSPSKPEEQPEYESNLKMYLYFVVFIIFGAFF
TLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKIQGH
IFDFTTKQAFDIVIMVLIWLNMVTMMVETEEQSVEKENVLFWINVGFVCIFTGECLLKMI
SLRHYYFTNGWNVFDFIVVILSIIGMSLSNLIEKYFVSPTLFRVVRLARIGRVLRLIKSA
KGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDLFNFETFGNS
MICLFQITTSAGWDGLLAPILNKNAYECSSSTEHPGSSVKGDCGNPAVGIAFFVSYIIVC
FLIVVNMYIAVILENFGVATEESADPLSEDDFEMFYEVWERFDPHASQFMEYNKLSEFAD
ALDPPLRIAKPNKLELISMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDILRGQMEERF
MASNPSKVSYEPITTTLRRKQEDTSAAVIQRAYRQYAVKRVSKFSDIQKNETLIDKEVAV
TDKLNCSSDKSELAPSTASQQSCHSVTINGNNKYEKDKSEKEVVGKDVTEQNI
NT seq
5922 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccaccgggtccagacagcttccgtccctttagttatgagtcc
ctcaaggccattgagagacggattgctgaggagaatgccaagagacccaagggcgagaag
aaaaaacgcaatgatgagaatgacctcaagccaagccgcgacctggaggcaggcaaagac
ctccctcttgtgtatggggacatcccaaagggcatggtgtcgacaccgctggaggacctg
gatccctactactgtaatcagaaaactttcatagtattgaacaaaagtaagtttatcttc
cgcttcaacgccgctcctgccttgtacctcctgagccccttcaaccctcttagaagaata
tcaattaagattttggtacattcattgttcagcatggtcatcatgtgcactatcctcacc
aactgtgcatttatgacactgtctagaccacctgattgggcaaagaatgtagagtacaca
tttactgcaatctatacctttgaatcccttgttaaaattttagctcgagggttctgcata
ggaaagttcacatttctaagagatccctggaactggctggatttctgtgtcattgttatg
gcgtacgtaacagagtttgtaaacctggggaatttctcagctctgcgcacgttcagagtg
ctgagagctttcaaagctatttcagttatcccaggcctgaagaccatcgttggtgcattg
ttccagtcggtgaagaagctttcagatgtgatgattctcaccgtcttctgcttaagcgtg
tttgccctcatagggttacagttgtttatgggccatttaaggcaaaagtgtgtactgtct
ccaaacacaaatatgtcagacgaggagtggactgcgtacacgctcaataagagtcattat
tatgtccttccaggcaacagagatccattgctttgtggaaatggcagtgaagctgggcat
tgtccggaggggtacgtttgcctcagagtgggaaggaacccagactatggttacaccagc
tttgactcatttggttgggccttcctttctctgtttagactgatgacacaggattactgg
gaaaaactttaccagcagacgttgcgggcagctgggaagccctacatgatgttttttgtg
ctggtgatattccttggctccttctatctggtcaatttgatcttggctgtagtagccatg
gcctatgaggagcagagccaggccaccattaaggaggctaaggagaaagaggaggagttt
caggccatgatggagcagctgaaacggcagcaagaggaggctcaggcagtagcaagtgga
gctgctgctgaaactggggaggtcactgacaaagccggtggtatagagagctcttctgac
acctccaagttcagctctaaaagtgccaaagagagacgcaacaggcgaagaaagaaaaag
gaggaggagggcaaaggggcagatgagaagattcctaaatcagagtcacaggacagtata
aggaagactcactgccgcttcactgtgaatgcaaatttgctcaactacaacatgaaatgc
tcgtctgcacatcagtcctttctgagttttcgtgggcctccgttctcacccagacggaac
agcaggaccagccttttcagtttccgaagccaagcgcaggatgcgtgctcagagactgac
tttgctgatgatgagaacagtatttttgaggacaacctgagtcggaggggctctttattt
cttccccggagatttgatcgacgcagcagcagtataagccagagcagcttcttgccacat
ctcctgcttccacccagtgggatcaagcacagctctgtagactgtaatggggttgtgtct
ctggtgggtgggaattctctcccatcctcacctgtagggctcctgctgcctaaagtgacg
gtagatatggcctccactggagacaatgctgacaccactgacacagagtacaaatcggct
ggtggagatacaaaccatgagtttatggacctccttgagggcccagaggccagacagaga
gcccatagtatagctagtgtcataaccagcacgatggaggagcttgaagagtcgaggcag
aagtgtcatccttgctggtacacttttgccaacacctttctcatctgggactgttgtcca
acatggcttaagctcaagaaagtggttaaacttattgtgatggacccattcatggaccta
actatcaccatctgtattgtgctcaatacaatgtttatggccatggaccattatccaatg
agcaacggtttctccagtatgttgaatgtgggcaatctggtattcactggcatcttcaca
gctgaaatggtcctcaagatcattgcgctggacccatactattactttcaggaggggtgg
aatatttttgatggaatcatcgtcagtttaagcttgatggagctttgcttggataaggtc
cctggcatgtctgttctgagatcattcagattgctaagagttttcaagttggctaaatcg
tggcccactcttaacacactgatcaaaatcattggtaattcagtgggggctttgggcaat
ctgacccttgtgctggccattattgtcttcatctttgctgtggtgggcatgcaactgttt
ggaaaaagctacaaggactgtgtgtgtaaaatctctgtggactgcactctgccccgttgg
cacatgagtgacttcttccattcattcctcattgtgttccgagtgctttgtggagagtgg
atagacaccatgtgggactgtatggaagtggctgggatgaccatgtgcatcattgtctac
atgatggtcatggttattggaaaccttgtggtgctgaacctgttcctggccctgctgctg
agctcattcagtgctgacaacctggcagcgactgatgatgacagcgagatgaacaatttg
cagattgccatcggacggattcacaaaggcattgccttcaccaagtccctgcttcgaagc
agctgcaacagtgtctgtctcaaggagaagaagaaagggaagggtgatgagaaatctctg
gatgagctccacaaatctttagggccaaatggtgtcccgagccatgtcatcaactttccc
atcaatagcaatggggatgtgaccggagtagacaaaaatggagacaagtacatagtcagt
agcaagagtgatgattccttgtctttcatcaacaatcctagtctgactgttaccgttcca
atcgctgtgggagagtctgactttgaaaacctcaacacagaggacttcagcagtgcctca
tcagatctagcaggatgccatgtgaatgtagatgacgatgaccagtacagctcctctgag
ggcagcacagtggatggtatggcaggtgttgaaagaggagaatctatagacttcgaacta
gaagaagctatggatcccgatgcctgctttcctgatggctgtgtgcaaaagtttcagtgt
tgtcaggtaaatgtggacgtgggctggtggaaggtgtggtggacactaagaaagacctgt
ttccggatagtggagcacaactggtttgagagcttcatcatcttcatgatcctgcttagc
agtggggcgctggcatttgaagacatctatattgagaaaaggaagacaattaaaacagtg
ttggagtttgctgacaaaatcttcacctacattttcattttggagatgttattgaagtgg
gtggcatatggatttgcaaagtacttcacaaatgcctggtgctggctggacttcctcatt
gttgatgtctccctggtcagtatggtagcaaacgccatgggatattctgaactcggtgcc
atcaagtctctgagaaccttgcgagctttgaggcccctgagagccttgtcacggttcgag
ggcatgagggtggttgtcaatgccctgctgggagccattccttccatcttcaatgtgctg
ctggtatgtcttatattctggctcatcttcagcatcatgggagtcaacttgtttgcaggg
aagtactcccattgtgtgaacaaaacgaatgtaccttaccttcgatcaatagtgaaaaac
aaaatcgagtgtgaagccttaaaccacacaggtgctctctggaagaatgtcaaaatcaac
tttgacaatgttggcatgggttaccttgcactgcttcaagtggctacattcaagggctgg
atggaaatcatgtatgctgctgtggactctccaagcaagccagaagaacaacctgagtat
gagagcaacctgaagatgtacctgtattttgttgttttcatcatatttggagccttcttc
acactcaatctctttattggtgtcatcatagacaacttcaatcaacaaaagaaaaagtta
ggaggtcaagacatcttcatgactgaagaacagaagaaatactacaatgccatgaaaaag
ctggggtcaaagaaaccacaaaaacctattccaagaccatcaaacaagattcaaggacac
atctttgacttcaccacaaaacaagcatttgatattgtaataatggttctaatatggctt
aatatggtaaccatgatggtggaaactgaggagcagtcagtggaaaaggagaatgtcctc
ttctggattaatgtaggattcgtttgcatctttactggagaatgcttattgaagatgatc
tcgcttcgccattactatttcacaaatggttggaatgtatttgatttcatcgtggtcatt
ctgtcaataattggtatgtctctctcaaatctgatagagaagtactttgtttcaccaacc
ttattcagagtcgtccgattggctcgaattggccgcgttctccgccttattaaaagtgct
aaaggaatccgcacactcttgtttgccttgatgatgtcacttcctgccttgttcaacatt
ggtctcctgctcttcttggtgatgtttatctacgccatcttcggcatgtcaaactttgct
tacgtcaagaaagaagcaggtatagatgaccttttcaattttgagacatttggcaacagc
atgatctgtctgttccagatcaccacctcagcagggtgggatggcctattagctcccatt
ctcaacaaaaatgcatatgaatgttccagtagcacagagcatcctggcagctctgtcaaa
ggagactgtggaaatcctgcagtgggaattgccttctttgtgagctacatcatcgtatgt
ttcctgattgtggtgaatatgtacattgcagtcatcctggaaaactttggtgtggccact
gaagaaagcgcagacccactaagtgaggatgattttgaaatgttttatgaggtgtgggaa
agatttgatcctcatgcatcacagttcatggagtacaataagctgtcagaatttgcagat
gctttggacccaccattacgcatagccaaacctaacaagctcgaactaatctccatggat
ctacccatggtgagcggtgaacgcattcactgcctggacatcctgtttgcattcacaaaa
cgtgttctaggtgagggtggggagatggacatcctaagggggcagatggaggagcgcttc
atggcttccaatccctccaaagtgtcctatgaacccatcactaccacgctacgccgcaaa
caggaggacacatcagctgctgtcatccagagagcatatagacagtatgcagtaaaaaga
gtcagtaagttctctgacattcaaaagaatgaaacgctcattgacaaagaggttgctgtc
acagacaaactcaattgtagcagtgacaaaagtgaactagcaccttcaactgcctctcaa
cagtcatgtcacagtgtgacaataaatggaaacaacaaatatgaaaaagacaaaagtgaa
aaggaggttgtgggcaaagatgttacggagcaaaatatataa
DBGET
integrated database retrieval system
