Lates calcarifer (barramundi perch): 108901044
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Entry
108901044 CDS
T04895
Name
(RefSeq) TRAF family member-associated NF-kappa-B activator isoform X1
KO
K12650
TRAF family member-associated NF-kappa-B activator
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04140
Autophagy - animal
lcf04621
NOD-like receptor signaling pathway
lcf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108901044
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108901044
04622 RIG-I-like receptor signaling pathway
108901044
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Gene cluster
GFIT
Motif
Pfam:
TBD
TMF_TATA_bd
PRP21_like_P
DUF641
Prefoldin_2
Motif
Other DBs
NCBI-GeneID:
108901044
NCBI-ProteinID:
XP_018557890
UniProt:
A0A4W6FVH1
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Position
LG1:complement(19137078..19142457)
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AA seq
534 aa
AA seq
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MLESKMSTVHLLIWRQFSHAQHSVCRRVGWKNPQPANHPALLPELRADWPGSSKGGSLQS
RGIPRGKFPNQLGYVKHTLPYPLRCFVTSHLKIRRRRCGGVKTINSTLAVTRMKLPERQC
RHWTRRDRNVRALQVSSLIFVVQDIANALSNFMYLSLLFSSTFAHQHLQHTISYRARARA
HVCCVSDDCGAHGMERNIGDQLNKAFEAYRQVSIEKDNAKKELQKMTEYYEGYTRTLQKQ
IDDQQQLISKLQAKLSATRQPSGEMKCEPCNHLLDGAGAYRIKQYPENMDPVDVAPNLPV
NSSVDYQDMLDVFEAIQGKFRQIRSLTQRQKDHLKRFHGGNDASSDQRFSMPIQCTDRTA
EAERPFSSVLRSAVDIPLPPTSLASRGASPEDRDLVDSLTKLSVKFPPSADSEYDFLNST
PERHIGLTMPMKLPLSNVPSTMTEEEPVELPMPFVYPTSPSHSTSSSLSQENVRGPQQPL
WSPELCDAVDVGTELATPQSSSPDKCAFCNAVVPQDRMNSHLYSHFSHKNEGDN
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgttggagagtaaaatgagcacagttcacctcttgatttggagacagttttcacatgca
cagcactcggtttgcagacgcgtaggctggaagaaccctcaaccagctaaccaccctgct
ctcctccctgagctccgcgctgattggccggggtcgagtaaaggcggaagtctacagagc
agggggattccccgagggaagttcccaaatcaactaggctatgtaaaacatacattgcca
tatcctctccggtgcttcgtaacttcgcatttgaagattaggcgacgacgctgcggtggt
gtcaaaacaataaattcgactttagctgttactcgaatgaagttgcctgaacgtcagtgc
agacactggacaagaagagacagaaatgtgagagcactccaggtcagtagtcttatattt
gttgtgcaagatattgcaaatgcattgagtaacttcatgtacttgtctttacttttcagt
agcacatttgctcaccaacatcttcagcacaccatttcatacagagctagagcaagggct
catgtctgctgtgtcagtgatgattgtggagcacacggcatggaaaggaacatcggagac
cagctcaacaaagcttttgaagcttatcgccaggtctccattgaaaaagacaatgctaag
aaggagctgcagaaaatgaccgaatattatgaggggtacactcgaacacttcaaaagcag
atagacgaccagcaacagttgatttcaaaacttcaagctaagttgtcagcaacaaggcag
ccatcaggagagatgaaatgtgagccttgcaaccatctccttgatggggccggtgcttat
aggataaaacagtacccggagaatatggaccctgttgatgttgctcctaatttgccagtt
aacagcagcgttgactaccaggacatgctggatgtatttgaagcaattcaagggaaattc
cggcagattcgatctttaacgcaaagacaaaaagatcacctgaaaagattccatggagga
aatgatgcatcaagcgatcagcgtttctccatgcctatccagtgcacagaccgtacagca
gaggcagagagacccttctcctcagtgctaaggtcagcggtggatatcccgctcccaccc
acgtccctggcgtcccgtggtgccagccctgaggacagggacttagtagactctctcacc
aaactcagtgtcaaattcccgccctctgcggacagtgaatatgacttcctgaacagtact
ccagagagacacattggtctcaccatgcccatgaagctgcctctcagtaacgtcccctcc
acaatgacagaggaggagcccgtggaactgcccatgccttttgtctaccctacatccccc
tcccactcaacatcatcttcactctctcaggagaatgtgcggggaccccagcagcctctc
tggagccctgagctgtgtgatgcagttgacgtggggacagagctggcgacgcctcagagc
agcagtcctgataaatgtgctttctgcaacgctgttgttcctcaggaccgaatgaacagc
cacctctactcgcatttctctcataagaatgaaggcgacaattga
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