Lates calcarifer (barramundi perch): 108901055
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Entry
108901055 CDS
T04895
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108901055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108901055
Spliceosome [BR:
lcf03041
]
Complex A
U1 snRNP components
U1 related factors
108901055
Complex B
108901055
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Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
DTW
Motif
Other DBs
NCBI-GeneID:
108901055
NCBI-ProteinID:
XP_018557913
UniProt:
A0A4W6FNM6
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Position
LG1:19779734..19792706
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AA seq
879 aa
AA seq
DB search
MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPMGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAAAVQPTGPPGVDSTAAAPGTASTT
NGSPQEEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAPGTTTAPAVQADNTATM
ATVMEAETATAVSEEHQSQAAVHHTAEVKTADAPVVSSESSAATEATASVEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFSELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPEASWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDNEKKGRDRDGKRDKDLEKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctccc
atgggaatgccacctatggggcagcgacctcccagcatgactccgatgcctcctggtata
attccccctggtataatgccaccaatgggagcacctccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacaggaccgcctggtgttgactctacagctgctgcacctggaacagctagtaccaca
aatggatctccacaggaagagcagccaaaaaagaaatccctgtggaccgaacacaaatca
ctggatgggaagacttattattacaacacagagaccaaacagtccacatgggagaaaccg
gatgaactcaagtctcctgcagaacaaatgttgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaactctcagacaaaggagtccagatggaccaaa
cccaaggagctggaggatctggaggcaatgatcaaagcagaggagaatggcacggcagag
gcagcagcccctggcaccaccacagctcctgcagtgcaagcagataatacagccactatg
gcgaccgtcatggaggcggaaactgcaacagcagtctcagaggaacaccagtcccaggcg
gccgtgcatcacacagctgaggtcaagactgcagatgcacctgtggtgtcctcagagagt
tcagctgccacagaggccacagccagtgttgaagttacaaaggaagaacggccagaactt
cagaagaaaacttacaaatggaacacaaaagaggaggccaagcaggctttcaaagagctg
ctgaaggagaagggagtgtcctcaaactcctcatgggaacaggccatgaaaatgattatc
aatgatccccgctacagcgcacttcccaaactgagtgagaagaagcaggcgtttaatgcc
tacaaagtccagacagagaaggaagagaaggaagaggccagaattaaatacaaggagtcc
aaagagactttccagaggttcttggagaaccacgacaagatgacatctaccaccagatac
aagaaagcagagcagatgtttagtgagctcgaagtgtggagttgcgttccagagagagac
aggctggagatctatgaagatgtgttgttctacctcgccaagaaagagaaggagcaagcc
aagcagctaagaaagaggaactgggaagctctgaaaaacattctggacaacatggccaac
gtcacctaccgcaccacctggtctgaggcccagcagtacctgttagacaaccccactttt
gcagaggatgaagagctgcaaaatatggacaaggaggatgccctaatttgttttgaggag
cacatccgggcactggagaaagaggaggaggaagagaaacagaagactcttctcagggag
aggagacgacaacgcaagaacagagaggccttccagaaatttctggatgagcttcatgac
catggccagcttcactccatgtctgcctggatggaaatgtacccaacgctgagctcagac
atccgctttgccaacatgctgggccagccgggttccactcccctggatctattcaaattc
tatgtggaagacctgaaggctcgctaccacgatgaaaaaaggataatcaaagatattttg
aaggacaaaggcttcctggttgaagtcaacaccagctttgacgattttggatcagtcatt
agctcagacaagagagccaccacactggacgcaggaaacataaagctggccttcaacagt
ttactagagaaggctgaagccagagagagggagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagcctttaagaacatgctgaaacaggccacaccaccgctggagcca
gaagcttcatgggaaggagtcagagagagattcttaaaagaatctgctttcgaagacgtg
actctggagtcagagagaaaaaggatattcaaagacttcatgcatgtcttagagcatgaa
tgccagcatcaccactctaagacaaagaagcactcaaagaagtccaagaagcaccacagg
aaacgttcccgctctcgatcgggatcagagtctgaggatgaggaataccacaagaagaaa
aagaggtcacagtccaaatccccctctgaacgctcctctagtggagaatctgagagaagc
tataagaaatccaagaagcacaagaagaagggcaagaagagacgccacaagtctgcatca
ccggattctgacaatgagaagaaaggaagagaccgtgatggaaagcgtgataaagacctc
gagaaagataaagagaatgacaagtctcgggggaaatctcgctccgactctaaacagaag
tctccgaaaaggaaagcagccaaagaagaaggtggctgggatacgtcaggcagcgagtta
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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