Lates calcarifer (barramundi perch): 108901133
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Entry
108901133 CDS
T04895
Name
(RefSeq) pumilio homolog 3
KO
K14844
pumilio homology domain family member 6
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108901133
03009 Ribosome biogenesis [BR:
lcf03009
]
108901133
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
108901133
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
108901133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPL
PUF
PUF_NOP9
Msl2-3_C
RXT2_N
Motif
Other DBs
NCBI-GeneID:
108901133
NCBI-ProteinID:
XP_018558050
UniProt:
A0A4W6EAC6
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All DBs
Position
LG9:2534988..2540691
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AA seq
657 aa
AA seq
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MEAKSKKPFSPKGGKKQKPTQKGKDSIGTKFGGKPGGKPGSKKPFKPYNNTEKKSRPGKG
RDGGKKEQKFAFSKAGMGQKKRKLSSANDGEEGGGPGAKRMKKGEFKPKKKELTKEELNK
NRQQRKKELKKNRQQAERKDMFQIICQCKQVWGDLRRKKCDNELRTKLMKDLHDLIRGKI
KQMAFAHDSVRVLQCFIQFGSHEQRQEVFAELKDDIIGLCKSQYGRHVVKKLLMYGNKEL
LAAVMQTFKGHVRPMLRHAAASSIIEYAYNDKAVLAQRLMLTEELYGNTFTVCKSSVCNT
IEKVAEMNPDKLNNIIDEMKQILTPMAQKEQVIKHSLVHKVFLDFFLLAPDKQRTEMIES
IRESVVYMAHTHDGARVAMHCLWHGTAKDRKIIIKTMKTYMVKFATGEFGHLVLLAIFDC
VDDTKLVKQAVLSEILSSLDEVIGNKYGKKVLLYLLSPRDPAHLLPEIIKVLEQGDGNAH
SKKDSATRRKELLEVVSPPLLEHLRENAGTMALDKATSVTISDILASACGDLRPAMTAVA
QLANQELVPGGIKGQLHMAEHPAGHLVLKWLIEQDLTLAEAGKEERFGRILVDTVGTDKM
KSWVKVNRGAMVLCSLLNSCDKSVVAEVKEALKSITSELSSISNNKGAEILLENLNK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggccaaatccaaaaaacccttttctcctaaaggtggaaagaagcagaaacctaca
cagaaaggaaaagattccatagggaccaaatttggtgggaaaccaggtggaaaaccaggc
agcaagaagcctttcaaaccttacaacaacacagagaagaagagcagaccggggaaaggt
agagatggcggcaagaaagaacagaaatttgccttctccaaagccgggatggggcagaag
aagaggaaactgtcgtcagcgaacgatggagaagaaggcggaggcccaggggctaagagg
atgaagaaaggtgagttcaagccgaagaagaaggagctgacgaaggaggagctgaataag
aacaggcagcagaggaagaaggagctgaagaagaacagacagcaggcggagaggaaggac
atgtttcagatcatctgtcagtgcaaacaagtgtggggagacctcaggaggaagaaatgt
gacaacgaattgaggacgaaactcatgaaggatcttcacgatctgatccgcgggaaaatc
aaacagatggcgttcgctcacgactcggtgcgagtgctgcagtgtttcatccagttcggc
agccacgagcagagacaggaagtgtttgctgaacttaaagatgacatcattggtttgtgt
aagtcgcagtatggccgacacgtggtgaaaaaactgctgatgtacgggaacaaggagctg
ttggcggccgtgatgcagacgtttaaaggtcacgtacgcccgatgctccgtcacgccgcc
gcctcatccatcatcgagtacgcctacaacgacaaagccgtgctcgcacagagactcatg
ctcacggaggagctgtacgggaacacgttcactgtctgcaagtcgtcggtgtgtaacacc
atcgagaaagttgcagagatgaacccagacaagctgaacaacatcatcgatgagatgaag
cagattctcacgcccatggcccagaaagaacaggtgatcaaacactctctggtccacaaa
gttttcttggacttcttcctgctcgcacctgacaaacagaggacggagatgatcgagtcc
atcagagagtcagtcgtctacatggctcacacacacgacggagcgcgagtggcgatgcac
tgtctgtggcacgggacggccaaggacagaaaaatcatcatcaaaactatgaagacgtac
atggtgaagtttgccacgggagagttcggtcacctcgttcttctggccatattcgactgt
gtggacgacaccaagctggtcaaacaggcagtgctctcggagattctgtcgtctctggac
gaagtcatcggaaataaatacggtaagaaggttctgctgtacctgctgagccccagagac
ccggctcacctgctgccagagatcatcaaggtgttggagcaaggagacggaaacgcacac
agtaaaaaggactcggccactcggaggaaagagctgttggaggtcgtctccccgccgctg
ctcgagcatctccgtgaaaacgccggcaccatggcgctggacaaggccaccagtgtcaca
attagcgacattttggcgtcagcctgcggcgacctgcggcccgctatgacggccgtcgct
cagctggccaatcaggagttagtaccgggagggatcaaaggacagcttcacatggcggag
catccagcaggacacctggtgctgaaatggctcatagagcaggacctgacactggcagag
gcaggcaaggaagagcggttcggcaggatcctggtggacacagtgggaacagacaaaatg
aagagctgggtgaaagtcaacagaggagccatggtgctctgcagcctcctgaacagctgt
gacaagtccgtggtcgcagaggtgaaggaggcgctcaaatccatcacgtcagagctcagc
agcatcagcaacaacaaaggagctgaaatcctgctggagaatctcaacaagtag
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