Lates calcarifer (barramundi perch): 108901174
Help
Entry
108901174 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108901174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108901174
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108901174
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108901174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
108901174
NCBI-ProteinID:
XP_018558109
UniProt:
A0AAJ7QK17
LinkDB
All DBs
Position
LG5:complement(5254025..5263937)
Genome browser
AA seq
685 aa
AA seq
DB search
MEVTRKNYKDCLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQAQSKYITKPFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQHANGVGTPSFISPSSSKGPAHVPEEHKD
FINRVIEKVEALFTNAEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERYIQ
VSKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVTMCVFPRILDTKLMASTQPFKELITNTSLAELEKQLKESPFKSPQV
ATAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQEKEKLGQTTKTWGEDGWVKPHY
ASTTSSGFGYSRGLRKRSISPVQGEQGSGEPLITDGWSHYSYPDSTGSKKMKTDDASGQA
NVDAIESKTSEGWLKTADTSDSAGLSPVPDEEESPEGTDPVNDAEGTVTWQQATTVHGRK
GQKNKKKKSEAAESTTSLFEVPEVW
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaaaaaattataaagactgtttaaacacggtgtacagcgctattgag
gaggctgactttcttgccatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactaaccaacgggctggacacaccagaggagcgatacacgaagcttaaaaagcat
tccatggattttctgctgttccagtttggattatgtacattcaagtatgaccaggcacag
tcaaagtatatcacgaagccttttaatttttatatattcccaaaaccgttcaacaggacg
tcccccgacataaagttcatctgccaaagttccagtatcgatttcctggccagtcagggg
tttgacttcaacaaggtgttctgtcatggaatcccatatctaaatcaagaagaggaggcc
cagctgagagagcagacagaggagaggaggaatcaacatgctaatggtgtggggacaccg
tccttcatctcaccgtcatcctccaaaggccctgcacatgtacctgaggagcataaagac
ttcatcaacagggtcatagagaaggttgaggctctcttcactaatgcagagaagaccttg
gacttggaaccatgtactgggtttcagagaaagctgatataccagaccctgaactggaag
tttcccaaagggcttcatgtggaaaccgtggaaacagaaaagaaggagcgatacatccag
gtcagcaaagtagatgaagaggagaggaagaggagggagcagcagaaactggagagagag
caggaggagctaaatgatgctgttggcttctccagggtcatccacgccatttcaaaatct
ggtaaacttgtggttggccacaacatgctgttggatgtaatgcacaccatccaccagttc
tactgccctcttccagaggatcttcaagactttaaagaggtcacaatgtgtgtcttccca
agaattctggacacaaagttgatggcttccactcagccatttaaggagctgatcactaac
acctctctggcagagctggagaaacagctgaaagagagccccttcaaatcaccacaagtt
gcaacggcagagggattccccagttatgacacagcccaggagcagctccatgaggcaggc
tacgatgcctacatcactggcctctgtttcatctccatggccaactacctgggttccttc
ttgactccacccaaagcctacatctcagcccgatctaaactcattgagcctttcttcaac
aagcttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttg
caacccaaaagagaccatgtcctgtatgtcactttcccaaaagaatggaagactagtgac
ctctaccagctctttagtgcctttgggaacatccaggtttcatggatagatgacacatca
gcatttgtgtccctgagtcaaacagaccaggtccagatagctatgaacaccagccgctac
gcagagagttacaggatccagacatatgcagagtacatccagggcaaacagcaggagaag
gagaagcttgggcaaaccaccaaaacctggggagaggacggctgggtgaaacctcactac
gcctccactacttctagtggttttggttattccaggggtttgaggaaacgcagcatcagt
ccggttcagggagagcaggggagcggagaacctctaattacagacggctggagtcactac
tcatacccagatagcacaggcagcaagaagatgaaaactgatgatgcaagtggacaggca
aatgttgacgctattgagagcaagacatcagagggatggctgaagacagcagatacatcc
gattcagcagggttaagtccagtccctgatgaggaggaaagtcccgagggcacagaccca
gtcaatgatgctgaggggacggtcacctggcagcaagccacgacggtccacgggaggaaa
ggtcaaaagaacaagaaaaagaagtcagaagcagctgaatctacaacatcgctgtttgaa
gttccagaagtctggtag
DBGET
integrated database retrieval system
