Lates calcarifer (barramundi perch): 108901230
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Entry
108901230 CDS
T04895
Symbol
col8a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type VIII, alpha 1a
KO
K23455
collagen type VIII alpha
Organism
lcf
Lates calcarifer (barramundi perch)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
108901230
NCBI-ProteinID:
XP_050928154
UniProt:
A0AAJ8DRE8
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Position
LG1:21375163..21408154
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AA seq
743 aa
AA seq
DB search
MPPFPVPFLLTLLQLAALTSVSGGAYYGHKQHPQPYQPVQHHQHMGMGKEGFPQQQYLGK
EVPYMQYPHYRKEIPQMPMHKGTDNARKGGGYKGGQDKGQTIPSGAEGIPQGEPGPAGPP
GPEGPPGPPGPPGNGQPGPMGRPGPPGPPGVPGVGKPGLPGMPGKPGGNGEAGPQGEMGP
RGEEGPSGQPGPQGPPGPPGLPGIGKSGVQGLPGQPGPKGEPGHKGLPGLPGLPGPKGDK
GMGQPGQPGHKGLPGPPGPAGPRGLPGFGKPGLNGAPGPQGPPGEKGHPGEQGPAGPSGE
GGQPGPPGLPGQGKPGQNGLPGQPGMPGAKGHPGPPGLPGKPGLPGFGKPGLPGPKGDKG
MSGPPGPPGPKGDKGHGGLPGMLGPPGPNGPPGPPGPMGPPGGLGAPGPKGDCGDGGPKG
LDGAMGDPGLPGTPGKDGLPGGRGEPGPRGPPGLSGAKGESGHKGLPGTPGPPGLSGPKG
QGGLPGEVGPQGPKGIPGMDGAAGSIGPPGIPGQKGDIGPPGLPGNTGEGSPGLPGPIGP
PGKEGPSGPPGQPGQPGPPGPPGPPGVPGLSPDMAGVLSEMGPGLDGVKAGSYGKKGKYG
GNGAEVMGASGLEMPAFTAVVTTPFPPVGTPVVFDKLLYNGRQNYNPQTGIFTCDMPGIY
YFAYHIHCKGANVWVALMRNNEPVMYTYDEYKKGFLDQASGSAVLPLQPGDTVYIQLPSD
QASGLYAGQYVHSSFSGYLLYPM
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccttccctgtccccttcctcctgacactgctacagcttgcagcacttacttct
gtgagtggtggggcatactatggacacaagcaacaccctcagccataccagccagtgcag
caccaccaacacatgggcatgggcaaagagggttttcctcagcaacagtaccttggtaaa
gaggtgccctatatgcagtatccccattacaggaaggagataccccagatgcccatgcac
aagggcacagacaatgctcgtaaaggtggtggatataaaggtggtcaagacaaaggtcag
acaatccccagtggtgctgagggaattcctcaaggagagccaggcccagctgggccacct
ggcccagagggacctccaggaccacctggacctccagggaacggacagccaggacctatg
ggacgacctggacctcctggtccaccaggagtgcctggagtgggtaaaccaggtttgcca
ggaatgccaggcaagccaggaggaaatggtgaggctgggccacaaggagaaatgggtcct
aggggtgaggaagggccatctggacagcctggacctcagggtcctccaggacctcctggg
ctaccaggaataggtaaatcaggggtgcagggattaccaggccaaccggggccaaaagga
gaaccaggtcacaaaggtctgccaggcctaccaggattaccaggacccaaaggagataaa
gggatgggccagccaggacaaccgggtcacaaagggctccctgggcccccaggaccagct
ggcccaagaggactgcctggttttggaaaacctgggttaaatggggcaccaggtccacaa
ggaccaccaggagagaaaggacatcctggagagcaaggaccagctgggccttctggtgaa
ggaggacagcctggcccaccaggactacctggtcaaggaaagccaggtcaaaatggtctg
ccaggacagccaggtatgccaggtgcaaaaggtcacccaggaccaccaggtctgccggga
aagccaggactgcctggatttggtaaaccaggactcccaggaccaaagggtgataaaggt
atgagtgggccacctggacccccaggacctaaaggagataagggccatggaggactacct
ggtatgcttggcccccctggaccaaatggtccacctggtcctccaggccctatgggacct
ccaggaggtttaggtgcacctggtcctaaaggggactgtggagatggaggacctaaaggg
cttgatggagccatgggtgaccctggtcttcctgggacacctggtaaggatggtctgccc
ggaggccgtggagagccagggccaagaggtcccccgggtctaagtggtgccaaaggagaa
agtgggcataaaggcctacctggtacacctggtcctccaggactttccgggccaaaagga
caaggtggattacctggtgaagtggggcctcaaggtcctaaaggaatcccaggaatggat
ggcgcagcaggatcaattgggcctcctggtattcctgggcaaaaaggagatattggtcca
cctggtctaccaggcaatacaggtgaggggagtccaggtcttcctggtcccattggaccc
ccaggaaaagagggcccatcaggaccccctggacagccaggtcagcctggccctcctgga
ccaccgggcccacctggagtacctggtctgtctcctgacatggctggagtactctctgag
atgggccctggactagatggtgttaaggctggtagttatggtaagaagggcaagtatgga
ggcaatggggcagaagtaatgggtgccagtggattggaaatgccagcattcacagctgtg
gtaacaactccctttccacctgtgggcactccagttgtctttgacaaactcctgtacaat
ggtcgccaaaactacaacccccagacaggaattttcacctgtgacatgcctggcatttat
tactttgcctaccacatccattgcaaaggagccaatgtgtgggtggctttgatgaggaac
aatgagccagtgatgtacacatatgatgaatacaaaaagggtttcctagaccaagcatca
gggagtgcggtattacctctacaacctggagacactgtgtatattcagctgccctcagat
caggcctcaggactttatgctgggcagtatgtgcactcctccttctctgggtacttgtta
tatcctatgtaa
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