Lates calcarifer (barramundi perch): 108901240
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Entry
108901240 CDS
T04895
Symbol
usp9
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108901240 (usp9)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108901240 (usp9)
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108901240 (usp9)
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108901240 (usp9)
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108901240 (usp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
108901240
NCBI-ProteinID:
XP_018558178
UniProt:
A0AAJ7QKE5
LinkDB
All DBs
Position
LG1:22850391..22888103
Genome browser
AA seq
2583 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQGQAPDAQSQPPLPQNQTSSPNSSNENSPVSPPDEQGQGDGPP
QLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKCEACQR
FFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMAT
NPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKGWLVDLINKFGTLNGFQMLH
DRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKKEA
KNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEV
NKVISSVSYYTHRHNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEKILRF
VIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNA
SKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDYS
CSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVFYR
HDLINQLQHNHALVTLVAENLSAYMETMRQFSKEEQAEFDPQTVRPGSRYSHVQEVQERL
NFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLMGDEPDLDPDINKD
FFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWRVV
IQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKASYDTLCVLDGDKD
SINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKHITLIVRFPNQGRQ
VDDLDIWSHTNDTIGSVRRGILTRIKANAAHTKIELFIGGEVVDPADDRKLIGQLNLKDK
TLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSLHLRYI
SFLWQVADLGCNLNMPLLRDGARVLMKLMPPDNTTVENLRAVCLDHAKLGENSLSPSLDS
RFFGPSPSQVLYLIEVVYALLMPASATLGEDASDFQYNFLKSGGLPLVLSMLTRNNFLPS
ADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPNAEGNIPVSPINQATHDQALVL
QSALQNIPNPASECMLRNVAIRLAQQISDEASKYIPDICVIRAVQKIVWASGCGTVQLVF
SSNEEISKIYEKTNAAKEPDGEDEQVCCEALEVMTLCFALMPTALDTLSKEKAWQTFIID
LLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGSTAKERAKHAGDYFTL
LRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTGETGVEETILEGHLGVTKELL
AFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKSGEFPTEQAIPVCSTPASI
NAGFELLVALAVGCVRNLKQIVDTLTDMYYLGCETLTEWEYLPPVGPRPNKGFVGLKNAG
ATCYMNSVIQQLYMIPPIRNGILAIEGTGTDVDDDMSGDEKQENESNVDPRDEVFSYHHQ
FDDKPSSKSEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNLREQH
DALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFTTLNVDI
RNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRFDYDW
ERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQVIQQNEPSEPTPPGSSKYR
LVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKMDDEEEMKNQCFGGE
YMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDSELVKYISELTISSTKPHQVKM
PGVIECSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNPPPGQDHLLPEAEEIAMI
SAQLAARFLFSTGFHTKKVVRGPASDWYDALCILLRHSKNVRYWFAHNVLFAYPNRFSEY
LLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPTASPGPSAQGCDNLSLSDHLLRAVLNL
LRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLNVPATFMLVALDEGPGPPIKYQYA
ELGKLYTVVSQLVRCCDVSSRMQSSINGNPPLPNPYGDTNLTAPVMPVQQLVAEILFVRT
SYVKKIIEDCSNSEETVKLLRFSCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQI
LLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSNCSVAYQ
ILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQSNETSNGYFLERSHSA
RMTLAKACELCPEEEPDEQEAPDDQDSSPPEDTSLYPHSPGTTQFQQNNHPHGQPYTGPA
AQHMNNPQRPGPASAPTPGPTQTPTPGPGPTPGPGPRAQENWESTEEVTPAPTSTPAPAP
PKE
NT seq
7752 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctccggtggggggcaatgacagtcagggccagggccag
gcacctgatgctcagagccaacccccactgccacagaaccagacatcatctcctaactca
tctaatgagaactctccagtgagcccaccagatgagcagggccagggggatgggccccct
cagctggaagaggaagagcccgctttccctcatactgacctagccaagctggatgacatg
atcaacaggcctcgttgggttgttccagttttgccaaaaggagaattagaagtcctcttg
gaagctgctatagacctgagtaaaaaaggactggatgtgaagtgtgaggcatgtcagagg
ttcttccgagatggtcttaccatctctttcacaaagatcctgacagatgaggcagtcagc
ggctggaagtttgagattcataggtgtatcatcaataacacacaccggttggtggagttg
tgtgtggccaagctctctcaggactggtttcctctactggagctgctggcaatggccacc
aaccctcactgcaagttccacatctacaatggcacacggccctctgagaccgtccccgcc
ggagcacagctggctgacgatgagctctttgcccgaccaccagacccacgatctcctaag
ggctggttggtggacttaataaacaaatttggcacgttaaacgggtttcaaatgttgcac
gatcgcttcatgagcggccaagcactgaacgtccagatcatcgctgcacttatcaagcct
tttggccagtgttacgagttcctcacattgcatacggtaaagaagtacttccttccagtc
atcgagatggttccccagtttctagagaatctcacagatgaggagctgaagaaagaggcc
aagaatgaagccaaaaacgacgcactgtccatgataatcaagtctctgaaaaatctggct
tctcgtgtaccaggacaggaggagaccgtgaagaatttagagatttttagattaaaaatg
attcttaggttattgcaaatttcttcttttaacggcaaaatgaatgcactaaatgaagtt
aacaaggtgatctccagtgtgtcctactacactcatcggcacaaccctgaagaggaggag
tggctgactgcagagcgcatggcggagtggatccagcagaaccacatcctgtccattgtg
ctcagggacagtttgcaccagccacagtatgttgagaaactggagaagatccttcgcttc
gttatcaaagagaaagctcttacaatgcaggatctggacaacatctgggctgcacaggct
ggtaagcatgaggccattgtgaagaatgtccatgaccttctggccaagcttgcatgggac
ttctcacctgagcagcttgatcatctttttgactgtttcaaggcaagctggaccaatgcc
agcaagaagcagcgtgaaaaactgctcgaacttatccggcgcttggctgaggatgataag
gatggtgtgatggcccacaaggtcctcaacctgttgtggaacctggcacacagcgatgat
gtgcctgtagacatcatggaccaggctcttagtgctcacatcaaaatattggattacagt
tgctcacaggacagagacactcagaaaatccagtggatagatcgcttcatagaggagcta
cgaaccaatgacaaatgggtgatccctgccctgaagcaaatcagagaaatctgtagcctc
tttggagaagctcctcaaaaccttagtcaaacccagagaagtcctcatgtgttttaccgc
catgatctgatcaaccagctgcagcataaccatgctttggtgactttggtggctgagaac
ctctcagcctacatggagaccatgaggcagttctccaaagaagaacaagctgagtttgac
ccccagacagtcaggcctggaagccgctacagccatgtccaggaagtccaggaacgactc
aacttcctgaggttcctgctaaaggatggccagttgtggctgtgcgcccctcaggccaag
cagatctggaagtgtttggctgagaatgcagtgttcctctgtgaccgtgaggcctgcttc
aaatggtactccaagctgatgggtgatgagccagacctggacccagacatcaataaggac
ttctttgagaacaatgttcttcagttggacccatctctgcttacggagaatggcatgaaa
tgctttgagaggttcttcaaagctgtcaactgcagggagggcaagctggtagcaaagcgc
agggcctacatgatggatgacctggaactaataggcttggactacctctggagggtggta
attcaaggaagtgatgacatcgccagccgagcaatcgacctgctgaaagagatttatacc
aacctcggaccaaaactacaagtcaatcaggttgaaattcatgaggatttcatccagtca
tgttttgaccgtctgaaggcatcctatgacaccctgtgtgtgttggatggagacaaagac
agcatcaactgtgcccgtcaggaggccatccggatggtgcgagttctcactgtgctcaaa
gagtacatcaatgagtgtgacagtgactaccatgaggagaggactatactgcctatgtcc
agagctttccgtgggaagcacatcacattgatcgtacgtttccccaaccaaggccgtcag
gtagatgacctggatatctggtcacatactaatgacacaattggctcagttcggcgtggc
atccttaccaggatcaaagctaatgctgcacataccaagatagagctctttattggtgga
gaggttgttgatccagctgacgacaggaagctgattgggcagctcaatttgaaggacaaa
acgctgatcacagccaagctgacccaggtgagtgccaacatgccctcaagcccagacagc
tcctctgactcatccactggctctcctggtaaccatggcaaccactatagtgatgggccc
aaccctgaggtggagagctgtcttcctggtgtgattatgtcactgcatctgcgctacatc
tccttcctgtggcaagtggctgacctgggctgcaacctcaacatgcctctgcttagagat
ggagctcgagttctcatgaaactcatgcccccagataacactacagtggagaatctgaga
gctgtttgtctggaccacgccaagctcggtgagaacagcctcagtccttccctggactcg
cgcttcttcggcccttcaccctcacaagtgctctacctcattgaggttgtgtatgctttg
ctaatgccagccagtgccaccctgggcgaggacgccagtgacttccagtacaacttcttg
aagagtggcgggctgcccctggtgctgagcatgctcaccaggaataacttcctcccatcg
gcagatatggagactcggcgtggggcatatctcaatgcgctgaaaattgccaagctcctc
ctgactgctgtgggttttggacatgtgaaggctgtggctgaggcctgccagcccaacgca
gagggaaatattcccgtctctccgattaaccaggccactcatgaccaggcgctggttctc
cagagtgccctgcaaaacatccctaaccctgcctcagaatgcatgctgcgcaacgtagcc
atccgcctggcccagcagatttctgatgaggcatcaaagtacatcccagacatttgtgtg
atccgagcggtacagaaaatagtgtgggcatcaggctgtggtactgtgcaacttgtcttc
agttccaatgaagaaatcagcaagatatatgagaagaccaatgcagccaaggagccagat
ggggaagatgagcaggtgtgctgtgaggccctagaagtgatgacactgtgttttgccctc
atgcccacggctctggacacactcagtaaggagaaggcttggcaaaccttcatcatagac
ttgctgctacactgccatagcaaatctgttcgtcagatggcccaagagcagtttttccta
atggcaactaggtgctgtatgggccatcgacccctccttttctttatcacccttctcttc
actgtgctagggagtacagccaaggagcgagccaaacatgctggggactatttcactttg
ctcagacatctgctgaactatgcctataacagcaacatcaacctgccaaatgctgaggtg
ctgctcaacaatgagatcgactggctaaaacggataagggatgaagttaagaggacgggg
gagactggtgtggaggagaccatcctggagggccaccttggggttaccaaagaacttcta
gccttccagacaccagagaagaaatattacatcggctgtgagaagggaggagcgaacctc
ataaaggagctgattgacgacttcatcttcccagcatctaatgtttaccttcagtacatg
aagagtggggagttccccacagagcaggccatcccagtgtgcagcacccctgcatccatc
aacgctggctttgagctcctggtggcgctggctgtcggctgtgttcgcaacctcaaacag
atagtcgacactctgactgacatgtactacttaggttgtgaaacgttgacagagtgggag
tacttgcctccagtggggccacggcccaacaaaggctttgtaggtctgaagaacgccggg
gccacctgctacatgaactctgtcattcagcagctgtacatgatccctcctatccgcaat
ggcatcctggccatcgagggcacgggcactgatgtggatgatgacatgtcaggggatgag
aaacaggagaatgagagtaatgtggatcctcgtgatgaggtgttcagctaccatcatcag
tttgatgataagccctccagtaagtcagaggacaggaaagagtacaacattggggtactg
cgtcacctacaggtcatctttggccatctggctgcatccagactgcagtactatgtccct
aggggattctggaaacagttcaggttatggggtgagccagtgaacttgcgagaacagcac
gacgctttggagtttttcaactctttggtggacagtctggatgaagctctgaaagccctg
ggccaccctgccatgctgagcaaggtgctgggaggatcctttgctgaccagaagatctgt
cagggatgtccccacaggtatgagtgtgaggagtcatttacaacactcaatgtagacatc
agaaaccaccagaacctgttggactccatggagcagtatgttaaaggagatctgctggag
ggagccaatgcctaccactgtgagaagtgtaataagaaggtggacacagtgaagcgcctg
ctgattaagaagctgccaccggtcctggccatccagctgaaacgctttgactatgactgg
gagagggagtgtgccatcaagtttaatgactactttgagttccccagggagctggacatg
gagccgtatacagtagctggtgtggccaaactagagggcgatgacgtcaacccggagaac
caggtgatccaacagaacgagccctctgaacccacaccaccgggtagctccaagtatcgt
ctggtgggagtgctggtccactcaggccaggctagtggaggacactactactcctacata
atccagaggaatgggggcgatggcgagaagaaccgctggtacaagtttgatgatggtgat
gtgactgagtgcaagatggacgatgaggaggagatgaagaaccagtgctttggaggggag
tacatgggcgaggtgttcgatcatatgatgaaaaggatgtcgtaccggaggcagaagcgc
tggtggaatgcctacatccttttctatgagcgaatggactcactggacaaggacagcgag
cttgtcaaatacatctcggagctgacgatctcctccaccaagccgcatcaggtcaagatg
cctggtgtcatcgagtgcagcgtccgcaagcagaacgtccaattcatgcacaaccgaatg
caatacagcctggaatatttccagttcattaagaaacttctgacctgtaacagtgtctat
ttaaaccctcctccaggacaagaccatcttctgccagaggcagaagagattgctatgata
agtgctcagctggctgctaggttcctcttcagcacaggttttcacaccaagaaagtagta
cggggtcctgccagtgactggtatgacgccctctgcatcctgctgagacacagtaagaat
gtacgctattggtttgcacacaacgttctgtttgcttaccctaaccggttctccgagtac
ctgcttgagtgcccgagcgctgaggtccgtggtgcatttgccaagctcatcgtctttatc
gctcacttctccctgcaagacggcccctgcccctcccccaccgcctcgcctggaccctct
gctcagggctgtgataacctcagtctaagtgaccacctgttgagagctgtactcaacctg
ctcagaagagaggtttctgaacacggccgtcacctgcagcagtacttcaacctctttgtc
atgtacgccaatctgggcttggcagaaaagacccagctgctcaagctgaatgtccctgcc
acgttcatgttggttgctctggacgagggtcccggacctcccattaagtaccagtacgct
gagctgggcaagctctacactgtggtctcccagctggtccgctgctgtgatgtctcctca
cgcatgcagtcctccatcaatggtaatcctcctcttcctaacccgtatggggacaccaac
ctgacagccccagtgatgcctgttcagcagctggtggcagagatcctgtttgtgaggacc
agctacgtgaagaagatcattgaagactgcagcaactctgaggagacagtgaagctgctt
cgcttcagctgctgggagaacccccagttctcctccactgtgctcagtgaactgctctgg
caggtggcgtactcctacacctatgagctgaggccttacctggacttgctgctacagatc
ctgctcatcgaggactcgtggcagacgcacaggatccacaatgtgctgaagggaattcca
gacgacagagatggactttttgacaccatccagcgctctaagaaccactaccagaaacgg
gcctatcaatgcatcaagtgcatggtggccctgttcagcaactgctctgtggcttatcag
atcctacagagtaacggcgacctgaaacgaaagtggacgtgggcggtagagtggttaggg
gacgagctggagaggaggccgtacacagggaacccccagtacacctacaacaactggtcc
cctccggttcagagcaacgagacctccaacggatatttcctggaacgctcgcacagtgca
cgtatgaccctggccaaggcctgtgaactctgtcctgaagaggagccagatgaacaggaa
gcacctgatgatcaagactcctccccacctgaggacacctctttgtacccacattctcct
ggaaccacccagtttcagcagaacaaccacccccacgggcagccgtacaccgggcccgct
gcccagcacatgaacaacccccagcgtcccggtcctgcctctgctccgactcctggcccc
acccagaccccgaccccaggccctggtcccactcccggcccaggcccgcgagcacaagag
aactgggagagcaccgaggaggtcacccccgccccgacctctaccccggcacctgccccg
cctaaggagtaa
DBGET
integrated database retrieval system
