Lates calcarifer (barramundi perch): 108901243
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Entry
108901243 CDS
T04895
Name
(RefSeq) ras-related protein Rab-5C
KO
K07889
Ras-related protein Rab-5C
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
lcf04144
Endocytosis
lcf04145
Phagosome
lcf04148
Efferocytosis
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108901243
04145 Phagosome
108901243
04137 Mitophagy - animal
108901243
04148 Efferocytosis
108901243
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108901243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108901243
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108901243
04031 GTP-binding proteins [BR:
lcf04031
]
108901243
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
108901243
Endosome - Lysosome transport
108901243
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108901243
Exosomal proteins of other body fluids (saliva and urine)
108901243
Exosomal proteins of colorectal cancer cells
108901243
Exosomal proteins of bladder cancer cells
108901243
GTP-binding proteins [BR:
lcf04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
108901243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
MMR_HSR1
Gtr1_RagA
RsgA_GTPase
MCR_beta
AAA_16
BrnT_toxin
Motif
Other DBs
NCBI-GeneID:
108901243
NCBI-ProteinID:
XP_018558183
UniProt:
A0A4W6CT89
LinkDB
All DBs
Position
LG11:complement(5440943..5451371)
Genome browser
AA seq
220 aa
AA seq
DB search
MAGRGGQARTNGTAASNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKELQ
RQASPNIVIALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
KLPKNEPQGGVGAGGRARGGVDLQEAAPQGRSGQCCGGGN
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atggcagggcgaggcggacaagcacggaccaacggcactgcggcgagcaacaagatctgc
cagtttaagctagtgctgttgggggaatcagcggtggggaagtccagcttggtgctgcgc
tttgtcaaaggccagttccatgaataccaggagagcaccatcggagctgccttcctcaca
cagacggtatgtctggatgacacaacagtcaagtttgagatctgggacactgcaggacag
gaacgatatcacagcttggcacctatgtactacaggggagcccaggctgccattgtggtc
tatgatatcaccaacacagatacattcacacgtgcaaagaactgggtgaaggagctccag
cgacaagccagcccaaatattgttattgcactggcagggaacaaagcagacctggccaac
aagagagctgtagatttccaggaagcacaagcatatgcagatgacaacagtttgctcttc
atggagacctcagccaagactgctatgaatgtcaatgagatttttatggctatagccaag
aagcttcccaagaacgagcctcagggtggagtgggtgctggtggacgagccagaggcggc
gtggacctgcaggaagctgcaccacagggcagaagtggccaatgctgtgggggcgggaac
taa
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