Lates calcarifer (barramundi perch): 108901257
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Entry
108901257 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog
KO
K13100
pre-mRNA-splicing factor CWC22
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108901257
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108901257
Complex C
U4/U6.U5 tri-SnRNP related factors
108901257
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Gene cluster
GFIT
Motif
Pfam:
MA3
MIF4G
Cnd1
Motif
Other DBs
NCBI-GeneID:
108901257
NCBI-ProteinID:
XP_018558197
UniProt:
A0AAJ7QKF6
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Position
LG1:23031069..23046135
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AA seq
1070 aa
AA seq
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MDSPNRSRSPSPVQREHDGPSEDGSSPAAEKPQQADSAERSPKDRPSPQASPADRSPSRS
PNSSSSDSSSSDDRDEQQGAVRRIRSSVAQIKRSTSKSREQDRSRSRERDRSRSKSRSRS
RSRSRSRSRGQDRSRSKSRDRDRSRSRERDRSRGRDRSRSRGRDRSRSRGRDRSRERDRS
RSRGRDRSRSRERDRERYDRGRYARDRYDDRRDDRNGRFDRRTNRDAESDHRRRGRSASP
LADGEPVAADEPPVKKKKEELDPILTRTGGAYIPPAKLRMMQQQITDKSSLAYQRMSWEA
LKKSINGLINKVNVSNIVNIIQELLQENIVRGRGLLARSVLQAQAASPIFTHVYAAVVAI
INSKFPQIGELILKRLILAFRRSYRRNLKQQCLTASKFVAHLINQNVAHEVLCLEMLTLL
LERPTDDSVEVAIAFLKECGLKLTEVSPRGINAIFERLRNVLHESSIDKRVQYMIEVMFA
IRKDGFKDHPVILEGLDLVDEDDQFTHMLPLDDEYNPEDILNVFKMDPDFLENEEKYKTI
KKDILDEGSSDSGEEGDGSDEDEDDEDENEEGEEDEKVTIFDKTEVNLVAFRRTIYLAIQ
SSLDFEECAHKLIKMDFPDSQTKELCNMILDCCAQQRTYEKFFGLLAGRFCLLKKEYMES
FEGIFSEQYDTIHRLETNKLRNVARLFAHLLYTDSVPWSVLECIRMSEETTTSSSRIFVK
ILFQELCAYMGLPKLNQRLKDQTLQPFFEGLFPRDNPRNTRFAINFFTSIGLGGLTDELR
EHLKNAPKMIMTQNQEVESSDSSSSSSSSSSSSDSSSSDSSSESDSDSSDSDSSSSSSSS
SDSDTKHRKRKKRKEQSEEKKKKQKEKDKKKKKDKPSDKKQSRHKNDRDRDDDSNDEKQA
RKDRRGRSREAEERERAHEGARRSRRDERAEEEEEEQQKEEERRRKIDSQGRQRDIERER
GTETEGEKGSGSERGSERMRRRERGRERGIRRTETGTERERRGGGDKTPHPSVLKQQTRL
MIDRQVKRFPLSSLSSSPHLSLWCFRIRDPSLFSVSPLSSFLPSDCIFYC
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggactctccaaacagaagtcgaagccctagtcctgtgcagagagaacacgatggccct
tcagaggacgggtccagtccagcagcagagaagccccaacaggctgactcagcagagaga
agccccaaagacaggccatcccctcaggccagtcctgctgaccgcagcccctccaggagc
cccaactcgagtagctcagacagcagcagcagcgatgacagggatgaacaacagggggca
gtgaggaggattaggagcagcgtggcccagatcaaaagatccacatccaagtccagagag
caagacagatccagatccagagagagagatagatcgagatccaaatccagatccagatcc
agatccagatccagatcgagatcgagggggcaagacagatccaggtccaaatccagagat
cgagacagatccaggtccagagagcgggacagatccaggggaagagacagatcaagatcc
agagggagggacagatccaggtctaggggacgagacagatccagagagagagatagatcc
aggtctaggggacgagacagatccaggtccagagagagggatcgggagcgttacgacaga
ggacgctatgctagagatcgctatgatgatcgccgcgatgacaggaatgggcgctttgac
cggaggaccaatcgggacgcagagtcagatcacaggaggcgtggccgctccgcttcccct
ctggcagatggggagccggtggcggcggacgagcctccggtcaagaagaagaaggaagag
ctcgacccgatcctgacaaggaccggcggagcttacatccccccggccaagctacgcatg
atgcagcagcaaatcactgacaagagcagcctggcctatcagaggatgagctgggaggct
ctgaagaagtccatcaacggtttaatcaacaaagtcaacgtgtccaacatcgtcaacatc
atccaggagctgctgcaggagaacattgtcagggggaggggtctgctggctcgctcggtg
ctgcaggctcaggcagcgtctccgatcttcactcacgtttacgccgccgtcgttgccatc
atcaactccaagttcccgcagattggagagctgatcctcaaacgcctcatcctggccttc
aggaggagctaccgccgcaacctcaagcaacagtgcctgacagcctccaagtttgtggct
cacctcatcaaccagaatgtggcccacgaggttttgtgtctggagatgctcactctgctg
ctggagcgaccgaccgatgacagcgtggaggtcgccatcgccttcttgaaggagtgtgga
ctcaaactgactgaggtctccccacgaggaatcaacgccatatttgagcgtctcaggaac
gtcctccatgaatcgtccatcgataagagggtccagtacatgattgaggtgatgtttgcc
atcaggaaggatggtttcaaagatcacccagtgatcctagagggcctggacctggtggat
gaggacgaccagttcacccacatgctgccgctcgacgacgagtacaacccagaggacata
cttaatgtgtttaagatggacccagacttcctggagaacgaggagaaatacaaaaccatc
aaaaaagacatcctggacgagggcagcagcgattcgggggaggagggagatggcagcgac
gaagatgaagacgatgaagatgaaaacgaggagggagaagaggatgagaaggtcaccatc
tttgataagacagaagtcaatctggttgcttttagaagaaccatctacctcgctatacag
tccagcttggacttcgaggagtgcgctcacaaactgatcaaaatggactttcccgacagc
cagacgaaggagctgtgtaacatgatcctggactgctgcgctcaacagagaacctacgaa
aagttctttggtctcttggccgggaggttctgtctgctgaagaaggagtacatggagagt
tttgagggtattttttcagaacagtacgacacaattcacagactggagaccaacaaattg
aggaacgttgcccgactgttcgctcacctgctctacacagactctgttccctggagtgtg
ttggagtgcatcaggatgagtgaggagaccacgacgtcgtccagcaggatctttgtgaaa
atccttttccaggagctttgtgcctacatgggcctccccaaactcaaccagaggctcaaa
gaccagacactgcagccattctttgaaggtctgtttcctcgtgataatccgagaaacact
cgcttcgccatcaacttcttcacctctattggactgggaggactcacggatgagttgagg
gaacatttgaagaacgctccaaagatgatcatgactcagaaccaagaggtggaatcctcc
gactcctcctcgtcctcttcgtcgtcctcttcctcatctgactcctcgtcctcggactcc
tccagcgaatcagattcagactcctcagactcagactcttcctccagcagcagcagcagc
tcagactcagacaccaaacacaggaagaggaagaagaggaaagagcaaagtgaggagaag
aagaagaagcaaaaagagaaggacaaaaagaaaaagaaggacaaaccctctgacaagaag
caaagcagacataagaacgacagagacagggacgatgacagtaacgacgagaagcaggcg
aggaaggacaggagaggccgttcgcgtgaggcagaggagcgcgagcgagcacacgagggc
gcccgccggagcagacgagacgaaagagcggaagaagaagaagaagagcagcagaaagag
gaggagaggagacgaaaaattgactctcaaggcaggcaaagagacatagagagggagaga
gggacagagacagagggagagaaagggagcgggagcgagcgagggagcgagagaatgagg
agaagagagagagggagagagagaggaataaggagaacagagacaggaacagagagagag
aggagaggaggaggagataaaactcctcatccctctgtcctgaagcagcagaccagactg
atgattgacagacaagttaagcgtttccctctgtcatccctctcttcttcacctcatctg
tcactgtggtgttttaggattcgggacccatctctcttctctgtctctcctctctcctct
ttccttccgtctgactgtattttctattgttga
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