Lates calcarifer (barramundi perch): 108901275
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Entry
108901275 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-4
KO
K06483
integrin alpha 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04514
Cell adhesion molecules
lcf04672
Intestinal immune network for IgA production
lcf04810
Regulation of actin cytoskeleton
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108901275
04514 Cell adhesion molecules
108901275
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108901275
09142 Cell motility
04820 Cytoskeleton in muscle cells
108901275
04810 Regulation of actin cytoskeleton
108901275
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
108901275
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108901275
04515 Cell adhesion molecules [BR:
lcf04515
]
108901275
04090 CD molecules [BR:
lcf04090
]
108901275
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108901275
Exosomal proteins of other cancer cells
108901275
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108901275
CD molecules [BR:
lcf04090
]
Proteins
108901275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_1
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP_3
Integrin_alpha
Motif
Other DBs
NCBI-GeneID:
108901275
NCBI-ProteinID:
XP_018558231
UniProt:
A0AAJ7QK11
LinkDB
All DBs
Position
LG1:22903552..22947509
Genome browser
AA seq
1029 aa
AA seq
DB search
MYPSVVRMCARCSLVLVQVLVLVCPAAGYNLDQDHSLEFSGPPSSMFGYSVLLHRHKTQS
WLVVGAPVANSSSNPLVQSPGVIYRCNISAESRHCHPMHADVHSCGKTCEAESDHQWLGV
SLSRQPGDNGGHILACGHRWKNVFYSKKDNQNNKLPNGVCYRYGNDLRHGQPIIPCYRDH
QRKFGEDYGSCQAGISNFLTEDLIIMGAPGTSYWTGSVLVFNTSSRGMSVYLDDDASGAV
SFGSYLGYSVGAGHFLSPATVEVVGGAPQYNQRGKVFIFTVDDNMLRVVSEVSGKELGSY
FGSSVCAVDLNADGLSDLLVGAPMATGAAREEGQVHVYINQGQGMLLEAEFQLTGSNAYA
ARFGETIADLGDLDDDGYHDVAVGAPQEDDLKGAIYIYNGRREGISPTPSQRISGSTLGR
DLRMFGQSLSSGIDIDDNGYQDVAVGAFLSDSAVVLRTRPVIQVKASLALPEQIDQGVSL
CQEHKTPTVCLNVTVCFSVRSRQFRGAIDLQYNLTSDLLHKPSFPHRFYFHGNGSSNTTK
GRVRARHGHLTCTTHVAYQRKDVRDIFTPVQFEVSYSLREANTIRASSKTFPPLKPILQQ
SAGHQNTITNQTRFARSCSLVDCSTNMQLSAHLVLPHQQKYFALGSGQTIMLNTSLLNSG
DNAFLPRLTLQFPNNIHYIKVLQNQENVVSCDVTEEINSTTVVVDCSVTSLLLPAQAQLN
ISFLLDVNQNSTPGDINIHVNTSSDNYEREDYLHDNSINLRLPLKYAVSINVHGFVTPTS
FVFGDEDTTPVDCYPERFNYTYKVLNSGPSRSVDTVVEIALPKILAPYRHRLLKVVDWQT
SHGVCSISDTTVSVTEDCEVPQASFIKQLIFFFSSTSTRRMFCGRVDELCEQLVCRLGNL
ETGRDATIQLETRLNPNVLLQAPGRQSIMRLESTAIISSPREDPHTVLIQKQPEALTVVE
ALFTQKPSMRVKIFIIVVSLVLGLLILAALIWCLWKAGFFKRELQKKEEEFRRHSWDYVP
KKSDRESFS
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtatccctcagtggtcagaatgtgtgcgcgctgcagtctggtcctggttcaggtcctg
gtgctggtctgtcctgcagccggatacaatctggatcaggaccacagtctggagttcagt
ggtcccccctcctccatgtttggatactctgtcttgctgcatcgccacaagactcaaagc
tggttggtggttggagctccagtagcaaactcatcctccaatccattggttcaatctcca
ggagtcatttaccgctgcaacatcagtgctgagtcccggcactgccatcccatgcatgct
gatgtgcacagctgtgggaagacgtgtgaagcagagagtgatcaccagtggcttggagtc
agtctgtccagacaacctggagacaatggggggcacatcctggcatgtggtcaccgctgg
aagaacgtcttctactcaaagaaagacaatcagaacaacaagctgccgaacggagtctgt
tatcgctatggcaacgacctgagacatggccaacctatcattccttgctacagagaccac
cagaggaagtttggtgaggattatgggtcgtgtcaagccggcatttccaatttcttgaca
gaggatctgatcatcatgggggctccagggacgtcttattggacgggttcagttctggtc
ttcaacacgtccagtcgagggatgtcagtgtacctcgatgatgacgctagtggagcggtc
agctttgggagctacctgggttactctgttggggctggtcacttcctgagtcctgctact
gtggaggtggtgggaggagctccacaatacaaccagaggggcaaggtcttcatcttcaca
gtagatgacaacatgctgcgggtcgtctctgaagtgtccggaaaagagctgggatcatac
ttcggctcaagtgtgtgtgcagtggatctgaatgctgatgggttgtcagatctgttggtc
ggtgctcccatggcaacgggtgccgccagggaggagggacaagtccatgtgtacatcaac
caggggcaggggatgctgttggaggcggagtttcagctgactggcagcaatgcctacgcc
gcccggtttggagagacaatcgccgacctcggagacctggacgacgatggttaccatgat
gtggcagttggtgccccacaggaagatgacctaaaaggagccatctacatttataatggc
aggagagagggcatctcaccaactccatctcagagaatttctggatccaccctgggtcgt
gacctcaggatgttcggccagtcgttgagctctggcatcgacattgacgataatggctac
caggatgtggctgtcggtgcgttcctctcggattcggccgtggttctcagaacccgtcca
gtgatacaggtgaaggcgtctctggctctgcctgaacagattgaccagggggtatcgctg
tgccaggaacacaagactccaactgtctgcctcaatgtcactgtctgcttcagtgtcagg
tccagacagttcagaggagccatagatcttcaatataatttgacctctgacctcctccat
aaaccgtccttcccccatcgtttttatttccatggtaatgggtcgtccaataccacaaag
gggcgcgtgagagcgcgacatggccatctcacttgtacaacacatgtggcttaccaaagg
aaagacgtgagggacatttttactccagtccagtttgaagtatcttatagtctcagagaa
gcaaacaccatcagagcctcctctaaaacctttcctccactgaaacccattctgcagcag
agcgcaggacaccagaacaccatcaccaaccagactcggtttgctcgttcctgttctctg
gtggactgttcgaccaacatgcagctgtcggctcacctagtgctgcctcatcagcagaag
tactttgctctcggctctggacagaccatcatgttgaatacctcgctgctgaactctgga
gacaacgctttcctgccgcgactgacactgcaattcccaaacaacatccactacattaaa
gtactgcagaaccaggagaacgtggtcagttgtgatgtcacagaggaaatcaacagtaca
acagtcgttgttgactgcagcgtcaccagcctcctcctcccagcccaggcccagttgaat
atcagcttcctgttggatgtgaaccagaacagcacacctggtgacatcaacatccatgtc
aacaccagcagtgataactatgagagggaggactatctccatgacaactccatcaatctc
cgccttcctcttaaatatgcagtcagcatcaatgtccatggtttcgttactcctacctct
tttgtattcggagatgaagacacgactccagttgactgctaccctgaaagattcaactac
acctacaaggtgttaaactctggtcccagtaggtcagtagatactgtggttgagattgca
ttaccaaagatcctcgcgccgtaccgacacagactactgaaggtggtcgactggcagacg
tctcacggtgtgtgttccatcagtgacacgactgtttcagtcactgaggactgcgaagtc
cctcaagcttccttcatcaaacaactcatcttcttcttctcctccacctctacccgcaga
atgttttgtggccgtgttgacgaactgtgtgagcagctggtgtgtcgtctcggtaacctg
gagacgggaagagatgccaccatccaactggagaccagactgaaccccaatgtgctactg
caagctccgggtcgtcagagtatcatgaggttggagagcacagcaataatatcgtccccc
agagaagatcctcacaccgtcctcatccagaaacaacctgaagcactgacggtagttgaa
gctctttttacccagaaaccctcaatgagagtgaagatcttcatcatcgttgtcagttta
gttttgggtctgttgatcctggctgctctcatctggtgtctgtggaaggctggtttcttt
aagagggagctccagaagaaggaggaggagttcaggagacacagctgggactacgttcct
aaaaagagcgatagagagagcttttcttaa
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