Lates calcarifer (barramundi perch): 108901278
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Entry
108901278 CDS
T04895
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108901278
03009 Ribosome biogenesis [BR:
lcf03009
]
108901278
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108901278
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108901278
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
90S particles
Helicases
108901278
Pre-60S particles
108901278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
108901278
NCBI-ProteinID:
XP_018558235
LinkDB
All DBs
Position
LG1:complement(23742725..23748515)
Genome browser
AA seq
664 aa
AA seq
DB search
MADLQMKLLRKKIQKRNEKNKERNILKKREEVEETANGLEEECCEEPAAACKADKQLKKK
LKQKKQNGAPAEGTTTEKIPPQKKKKKKRKLTDTAESPAEKKTKTVKEAEEDEEEEMGAA
TVADEEGQQATDKPEESADEEEEEEEEEGDDDDEDQPELPSGLTGAFEDTSFASLAELVS
ENTLKGVKEMGFEHMTEIQHKSIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFM
PRNGTGVVILSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVA
TPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQTMLFSATQ
TRKVEDLARISLKKEPLYVGVDDNKDNATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKK
LMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAAR
GLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVP
LSEFEFSWSKISDIQSQMEKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYSVNTLNLP
MVALSFGFKVPPYVDLNVHSSKGVKLQKRGGGGGFGYQKSKNVQKSKIFRHVNKGKSDKR
QFSR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctacagatgaagcttctccgcaagaaaattcagaagagaaatgaaaagaac
aaggagcggaatatactaaagaaacgggaagaagtcgaggagaccgcaaatgggctggaa
gaggaatgttgcgaggaaccagcagctgcttgtaaggcagacaagcagctcaagaagaaa
ctgaagcagaagaagcagaatggggcaccagcagaagggaccaccacagagaaaattccc
cctcagaagaagaaaaagaagaaacggaagctgactgacactgctgaatcaccagctgag
aagaagaccaaaacagtgaaagaagctgaagaagatgaggaggaagagatgggggcagca
acagtagcagatgaagaaggacaacaggccactgacaaaccagaggaatctgcagatgag
gaggaggaggaagaagaagaagagggagatgatgacgacgaagatcaacctgaattacca
tccggcttaacaggggcattcgaggacacatcgtttgcctctcttgctgagttggtgagc
gagaacactctgaaaggagtgaaggagatgggctttgaacacatgacggagatccagcac
aaaagtatccgtcccctgctggaaggaagggatgtgctggctgcagccaagacgggcagt
ggtaaaaccttggccttcctcatcccatctatagagctcatctacaaactaaagttcatg
cccaggaatggcaccggcgtagtgatactttcgcctacgcgcgagttggcaatgcagacc
tacggcgtgctgaaggagctcatgacacaccacgtgcacacgtatggtctgatcatgggg
ggcagcaaccgctcagctgaggcccagaaactggccaacggtgtcaacatcctggtggcc
acacctggccgtctgctggaccacttacagaatacccctgggttcatgttcaagaacctt
cagtgtctgattatcgatgaggccgaccgtatcctggaggtgggcttcgaggaggaactg
aagcagatcatcaaattgctgccgaagaagagacagaccatgctgttttccgccactcag
acccgtaaggtggaggacttggctcgcatatcactgaagaaagagccgctctatgtcggg
gtggacgacaacaaagacaacgctaccgtcgacggcctggagcagggttacgtggtgtgc
ccgtctgagaagcgattcctgctgctcttcaccttcctgaagaagaaccgtaagaagaag
ctgatggtcttcttctcttcctgcatgtccgtgaaattccactacgagctactgaactac
atcgacctccccgtcatggccatccacggcaagcagaagcagaccaaacgtaccaccacc
ttcttccagttctgcaacgccgactcaggcatcctgctgtgcacagacgtggcagctcga
gggctggacatccctgaggtggactggatcgtccagtacgaccctccagatgaccccaag
gagtacatccacagggtgggcagaacagcccgaggcatcaacggaagaggccacgcgctc
ctcatccttcgaccggaggagctcggcttcctgcgcttcctcaaacaggccaaggtaccg
ttgagcgagtttgaattctcctggagtaaaatctccgatatccagtcccagatggagaag
ctgattgagaagaactactacctccacaagtcggctcaggaagcctacaagtcctacgtg
agggcatacgactcccactcgctcaaacagatctacagcgtcaacaccctcaacctccca
atggtggcgctgtcatttggcttcaaggttcccccatatgttgatctcaacgtccacagc
agcaaaggcgtcaagttacagaagcgaggcggcggcggaggtttcggataccagaagtcc
aagaacgtgcagaaatccaaaatctttaggcacgtcaacaaaggaaagagtgacaagagg
cagttctcccgctga
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