Lates calcarifer (barramundi perch): 108901310
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Entry
108901310 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 14
KO
K15156
mediator of RNA polymerase II transcription subunit 14
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108901310
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Tail
108901310
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Med14
Med14_C
RM5_Med14
RM8_Med14
RM6_Med14
RM3_Med14
RM2_Med14
Motif
Other DBs
NCBI-GeneID:
108901310
NCBI-ProteinID:
XP_018558283
UniProt:
A0AAJ7QK80
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All DBs
Position
LG1:complement(22835315..22847697)
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AA seq
1435 aa
AA seq
DB search
MAPVQIGSDGQLVPLGGPVVSGPQPPPPGAPATHGIRLSLLIEFLLQRTYHEITLLAELL
PRKTDMERKIEIVQFASRTRQLFVRLLALVKWASNAGKVEKCAMISSFLDQQTILFVDTA
DRLASLARDALVHARLPSFAIPFAIDVLTTGSYPRLPTCIRDKIIPPDPITKAEKQTTLN
QLNQILRHRLVTTDLPPQLANLTVANGRVRFRVEGEFEATLTVMGDDPDIPWRLLKLEIL
VEDKETGDGRALVHSLQVNFIHELVQARLCADEKPLQDMYNCLHSFCLSLQLEVLHSQTL
MLIRERWGDLVQEERYVPAKYLTLTVWNQQVLGRKTGTASVHKVTIKIDESDGSKPLQIS
HEPPLPACDSKLMERAMKIDHLSVEKLLIDSVHARSHQKLQELKAILKTSNPSDNSFIET
ALPTLVIPILEPCGRSECLHIFVDLHSGMFQPMLYGLDQSMLDDIEKTINDDMKRIISWL
QQLKFWLGEQRCRQSVKHLPTVCTDVLHLSNSASHPVGSLSKHKLFIKLTRLPQYYIVVE
MLEVPSSPTALQYKYSFLSVSQLEGEDGPMCAQLLQHFKPNLEHLVQDTTTGKGARPGTK
RKISGDQGDPEPKKPKRSGEMCAFNKELAHLVAMCDTNMPFVGLRTELSNMEIPNQGVQV
EGDGSSHAIRLLKIPPCKGVGEETRRALERSLLDCTFRLQGRNNRTWVAELMLANCPLNS
THSKEQASTRHVYLTYENPLSEPVGGRKVVEMFLNDWNAISQLYQCVLNFARALPEMPSY
LSLFSEVRLYNYRKLVLCYGSTKGSSVTIQWNSSSQRFHLALGTVGPNSGCSNCHNIILH
QLQEMFNKSPNVMQLLQVLSDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSPTH
IRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNTKIVEGFYPAPGLKTFLNMFVDSNQDA
RRRSVNEDDNPPSPVGVDVMDSLMNQLQPQQQPQTMRMGAGGVYPPLTSPPPNYHANVTP
SPSMMPTQSPGNIHASGSPSGALRAPSPFGPTPSPSSLGIAMGQTSFASPHGPLDPSSPY
AMVSPSHRVQWQGSPQVSGPSPGARIHGMSPGNPSLHSPIPDPHSPRAGTSSQVMPTSMP
PPRKLPQRPWAASIPTILTHNALHVLLLPSPTPCLVPGLAGSYLCSPLERFLGSVIMRRH
LQRIIQQEANLSIVNSNEPGVIMFKTDVLKCRVALNPKNYQTLQLKVTPENTGPWSQEEL
QVLEKFFETRVAGPPFKYNTLNAFTKLLGAPTNILRDCVRIMKLELFPDQAAQLKWNVQF
CLTIPPSAPPIAPPGTIAVVLKSKMLFFLQLTQRIPVPQEPVSIIVPIVYDMATGLTQQA
DIPRQHSSSGAAALMVSNILKRFNELHPARQGECTIFASVHELMANLNLPPGTRQ
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atggctccggtgcagattgggtcagatgggcagctcgtcccacttggaggtccggtggta
tcgggtccacagccgccaccacccggggccccagccacgcacggtatccgactgagcctg
ctaattgagtttcttctccagaggacgtaccatgaaattaccctgctggcagaactactt
cccagaaaaacggatatggagaggaaaattgagattgtgcaatttgccagtcgaacgagg
cagctatttgtgcgtctgcttgccctggtaaagtgggcaagcaatgcagggaaagttgag
aagtgtgcgatgatctccagcttcttggatcagcagaccatcttgtttgtggatacagct
gaccgactggcatcactggccagagatgcactcgttcatgcccgtttgcccagctttgcc
atccccttcgccatcgatgttctcaccacgggctcatacccacgcttgcccacatgcatt
cgagataagatcattcctccagaccccattacaaaggctgagaagcagaccaccctgaac
cagctgaatcagattctgcgacaccgcctcgttacaacagacttaccaccccagctagca
aacctcacagttgctaatgggcgagtaaggtttcgtgtcgaaggagagttcgaggctact
ttaaccgtgatgggagatgaccctgacattccctggaggctgctgaagctggagattctg
gtggaggacaaagaaactggagatggccgagccttggtccacagtttgcaggttaacttc
atccatgagttggtccaggcacgcctttgcgcggatgaaaaacccctacaggacatgtac
aactgcctgcactccttctgtttgtcactgcagctcgaggtgcttcactcccagactctg
atgctgatcagggagcgatggggagacctggtgcaggaggagagatacgtgcctgcaaaa
tacctcacactcactgtctggaaccaacaggttttgggtaggaaaacaggaacagcatca
gtacataaagtcaccatcaagattgatgagtcagatggatctaagccattgcaaatatct
catgaacctccactccctgcctgtgactccaaattaatggaaagagctatgaagattgac
cacctgtcagtggagaaacttctgattgacagtgtgcatgcacggtcccatcagaagcta
caggaactgaaggccattctaaagaccagcaatcccagtgacaactctttcatcgagact
gctttacccacacttgttataccaatacttgagccctgtggtcgttcagagtgcttgcac
attttcgtagacttgcactctggcatgttccagcccatgctttatggattagatcagtcc
atgctggatgacattgaaaagaccatcaacgacgatatgaagcgcatcatatcctggctg
caacaactgaagttctggttgggggagcagcgctgtcgacagtctgtgaagcaccttccc
actgtgtgtactgatgtgctacacctctccaactcagcctctcacccagttggcagcttg
tccaaacacaaactcttcattaagctcacacgtcttccgcagtactacattgtggtggaa
atgcttgaagtgcctagtagtcccacagccttgcagtacaagtactccttcctctctgta
tctcagttggaaggggaggatggacccatgtgcgcgcagctactgcagcatttcaagccc
aatctagaacaccttgtccaggacactacaacagggaaaggggcccgacctgggactaag
agaaagatctctggagaccagggggacccagagccaaagaagcctaagcggtctggggaa
atgtgtgccttcaacaaggagctggctcacctggtagcgatgtgtgacaccaacatgcct
tttgttggcctcagaacagagttgtccaacatggagattccaaaccagggtgtccaagtg
gagggagacggcagcagtcacgcaatacgtcttctgaagattcctccctgtaaaggagta
ggagaggagaccaggagagctttagagcggtccctgctagactgcaccttccgactgcag
ggcaggaacaaccgaacctgggtggctgagctgatgctggccaactgtcctctcaacagc
acacatagcaaagagcaagcatccacgcggcacgtttatctgacctatgaaaaccctctg
tcggagccggtgggtggacggaaggttgtagagatgttcctcaatgactggaacgccatc
agtcagctctaccagtgtgttctcaacttcgctcgtgcactgccagagatgccatcgtac
ctgagcctgttctcagaagtgcggctgtataactaccgtaagctggtgctgtgctatggc
tccaccaagggcagctctgtcaccatccagtggaactccagcagccagcgtttccacctt
gccctgggcactgtggggcccaactctggctgctctaactgccacaatatcatcctccac
cagttacaggagatgttcaacaagagccctaatgtgatgcagctgctgcaggtgctttct
gacacacaggcccctctgaatgcaattaacaagctaccaacagtgcccatgctgggcctg
acccagcgcaccaacactgcctaccagtgcttctccattttaccccagtcacccacacac
atccgcctggcgttccgaaacatgtactgcattgacatctactgccgcagccgcggagtg
gtagccatcagagatggagcctacagtctctttgacaacactaagattgtagagggcttc
taccctgctccaggactcaagacattcctgaacatgtttgtagacagcaatcaggatgct
cgcagacgctccgtcaacgaagacgataacccgccctccccggtgggcgtagacgtgatg
gacagtctgatgaaccagctccagcctcagcagcagccgcagacaatgagaatgggagca
ggaggtgtatatcctcctctcacttcaccgccaccaaattaccacgctaatgtaactcct
tcaccatccatgatgcccacccagtcaccagggaacatccatgcctctggctcccctagt
ggggctctgagggcaccctctccttttgggcccaccccgtctccgtcttctctgggcata
gccatgggccagaccagctttgccagtccccacggtcctctggaccccagctctccatat
gccatggtgtctcccagccatagggtccagtggcaaggctcaccccaggtctcagggcct
tctcctggggcacggatccacggcatgtctcctggcaacccgtcgctgcactcgcccatc
cctgaccctcattctccacgcgctggaaccagttcacaagtcatgcctaccagtatgcct
cctccccgcaagctacctcaacgcccctgggctgcctccattcctaccatcctcacccac
aatgccttgcatgtgcttcttctaccctcacccaccccctgcctggtgccgggcctggca
ggaagctacctctgctcgccgctggagcgctttctgggttcagtgatcatgagacggcac
ctgcagaggatcatccagcaggaagccaatttgtccatcgtgaactctaatgagcctggg
gtgatcatgttcaagacggacgtgctcaagtgccgggttgctctcaacccaaagaactac
cagacgctgcagctcaaagtcactccagaaaacacaggtccctggtcccaggaggagctt
caggtgctggagaagttctttgagacacgggttgctggtcctccattcaaatacaacact
ctgaatgcctttacaaaattgctgggggcgcccactaacatccttagggactgtgtgcgc
atcatgaagctggaactgttccctgaccaggctgcgcagctgaagtggaacgtccagttc
tgtctcaccatccctcccagcgctcctcccatcgccccgccggggaccatcgctgtggtg
ctcaagtccaagatgctcttcttcctgcagctgacccagcgtatcccagtgccgcaggag
ccagtgagcattatcgtacccattgtgtacgacatggccacgggcctcactcagcaggcc
gacatccccagacagcacagctcatctggggctgcagcactcatggtctctaatatcctg
aagaggttcaatgagctgcatcctgcaagacagggcgagtgtacgatatttgcttctgtt
cacgagctgatggccaacctcaacctaccccccggcactcgtcagtag
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