Lates calcarifer (barramundi perch): 108901479
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Entry
108901479 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: protein SEC13 homolog
KO
K14004
protein transport protein SEC13
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf04141
Protein processing in endoplasmic reticulum
lcf04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108901479
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108901479
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
108901479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108901479
04131 Membrane trafficking [BR:
lcf04131
]
108901479
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108901479
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
108901479
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
108901479
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
108901479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EIPR1
WD40_Gbeta
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
108901479
NCBI-ProteinID:
XP_018558469
UniProt:
A0AAJ7QKB8
LinkDB
All DBs
Position
LG12:1623385..1627510
Genome browser
AA seq
325 aa
AA seq
DB search
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRTVKIFDVRNGGQILVADLRGHEGPV
WQVAWAHPMFGNILASCSYDRKVIIWKEENGAWDKMYEYTGHESSGRXISVRAVCWGPYD
FGLILACGSSDGAISLLTFTGDQQWDVKKISNAHTIGCNAVSWAPAVVPGSLIDQPSGQK
PNYVKRFVSGGCDNLVKLWKEEDGQWKEDQKLEAHSDWVRDVGWAPSIGLPTSTIASCSQ
DGRVFIWTCDDPAGNTWTAKLLHKFNDVVWHVSWSITGNILAVSGGDNKVTLWKESMDGQ
WACISDVSKGQGAVSTITDTQQIEQ
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggtttctgttattaacacagtggacacctcccacgaggacatgatccacgacgcacag
atggactattatggaactcgactcgccacctgctcctctgatcgcaccgtaaagatcttc
gatgtcagaaatggaggtcagatactggtcgcagacctcagaggccatgaaggtcctgtg
tggcaggtagcgtgggctcacccgatgttcggcaacatcctggcctcctgttcctacgac
cgtaaagtcatcatctggaaggaggagaacggagcctgggacaagatgtacgagtacacg
ggacacgagtcgtcaggtcggtagatctctgtgcgtgcagtctgctggggtccctatgac
ttcggtctgatcttggcctgcggcagctcagacggagccatttccctcctcacgtttacc
ggtgatcagcagtgggacgtcaagaagatcagcaacgcacacaccatcggctgtaacgca
gtgagctgggctcccgccgtggttccaggcagcctgatcgatcagccgtcaggacagaaa
ccaaactacgtcaaacgcttcgtctccggcggctgcgacaacctcgtcaaactctggaaa
gaggaggacggtcagtggaaggaggatcagaaactggaagctcacagtgattgggtgaga
gatgtcggctgggctccgtccatcggtctccccaccagcaccatcgccagctgctcccag
gacggacgtgtgtttatctggacgtgtgacgacccggccggtaacacctggacggccaaa
ctgctccataagttcaacgatgttgtttggcacgtcagctggtccatcactggaaacatc
ctggctgtgtctggaggagacaacaaggtgacgctgtggaaggagtcgatggacggtcag
tgggcctgtatcagcgacgtcagcaaaggccagggcgccgtctccaccatcacagacaca
cagcagatcgagcagtga
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