Lates calcarifer (barramundi perch): 108901481
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Entry
108901481 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: retinoblastoma-like protein 1
KO
K04681
retinoblastoma-like protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04110
Cell cycle
lcf04218
Cellular senescence
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108901481
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108901481
04218 Cellular senescence
108901481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108901481
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
108901481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
Rb_C
Motif
Other DBs
NCBI-GeneID:
108901481
NCBI-ProteinID:
XP_018558470
UniProt:
A0AAJ7QKI0
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Position
LG12:1647173..1658660
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AA seq
1059 aa
AA seq
DB search
MRGEESSDSESGRMEESSVRRSLETLCQELNMDEQTAAAAMENFTAIWNTYTLEGEVVHW
LACSLYAACRKGSTPTVGKGLMEGNCVSLTRILRSSKLSLIQFFSKMRKWADMSNLSQDF
RLRMDRLERNFEVSTVIFRKFEPIFMDMFQNPQGGEPPRQPRSRKHRRLPCHISDVFKFC
WTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLVFGNALLCSNRKDLINPTFRGLPALYRAD
GHVSGDEPPPCVLERLCELHDGLVVEAKGIKQHYFKPYIQKLFQRQILKGNEELLTEMLD
PQNFIDNNKAINREYEEYVLTVGDFDERVFLGADADEEIGTPRKIVQEPSASQTTNHSQL
QQHVEKSGSLAPSTPLTGRVYLKEKDLLVTPVSSATQSVSRLQSMVAGLRTAPSDHLMQI
FKSCSRDPSESILTRVKTLGQTFKEHYTNDSEDTPGSHIDFAENRLKLAEILYYKILENV
MAQETKRLQGKDMSVLLEQDIFHCSLMACCLEVVLFSYSSQRTFPWIITVFKLAPFYFFK
VIEVFIRSEEGLSRDMVKHLNSIEEQVLESRAWTSDSALWSALEAAGNKVPTVEEVNFSS
SLDSSSGSGSISGVQPHLPLVALSPIIHPRIREFRSGLGSARKDVPPSPLSVHDRYSSPA
AGSAKRRLFGDDPPNLSLSPVLSPAKRLTFGSSNTLKIGGQGSQTTVVSIPLQGVSNDRT
ITLIPVQPCGDSSGAVTAQFLLTASPSRPTPAPVTSDPQTGNGRPRRTGSLALFFRKVYH
LASVRLRDLCVKLDISSELRGKIWTCFEHSLVNCTDLMKDRHLDQLLLCSIYIISKITKE
THTFQDIMKCYRSQPQAGSHVYRSVLLRHTLREQVADENMEVDPVSGGESAEKTNPVSGE
SNSSQSGEEERGDLIQFYNTVFILKMKSFALRYATHDNRVDAPPLSPFPSVRAQPLSPRR
VSQRHSLYVSPHKNSAGCLTPNSYTYRINSSPSKELSDINRMIRQGCVSRKRAFTMEGDV
MMSPAACDSPSKRACPENGSSPDVLLKRLQDVVSERQSR
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcgaagagtcgtcggattcggagtccgggaggatggaggagagttcagtccgg
aggagtttggagacgttgtgtcaggagctgaacatggacgaacagacggccgccgcagcc
atggagaacttcactgccatatggaatacatataccctggagggggaagtcgtccactgg
ctcgcctgttcgctgtacgccgcctgcaggaagggatcgaccccgaccgtgggtaaaggg
ctgatggagggaaactgtgtctccctcaccaggatccttcgatcttccaaactcagtctg
atccagttcttctctaagatgaggaagtgggccgacatgtccaacctgtcgcaggacttc
aggctacgcatggaccggctggagcgcaactttgaggtctccacggtgatctttcgcaag
ttcgagcccatcttcatggacatgtttcagaacccgcagggaggcgagccgccacggcag
ccacgcagcaggaaacacaggcggcttccctgtcacatcagtgatgtgttcaagttctgc
tggacgctgttcgtctacaccaaaggtaacttccgaatgatcggcgatgacctggtgaac
tcgtaccacctgctgctctgctgtctggacctggtgtttggaaacgctctgctctgctcc
aacaggaaggatctgatcaacccaacgttcagaggtcttcccgctctgtaccgagctgat
ggtcacgtctcaggtgacgagcctcctccctgtgtgttggagaggctgtgtgagctgcac
gacggactggtggtggaggcgaaaggcatcaaacagcactacttcaaaccgtacatacag
aaactgtttcagagacagatcctgaaaggaaatgaggagcttttaacagaaatgttggat
cctcagaacttcatagacaacaataaagccataaacagggagtacgaggagtacgtgctg
acggtcggagacttcgacgaacgagtgtttctcggagccgatgccgatgaggagatagga
acgccaaggaagatcgttcaggagccgtctgccagccagacgaccaatcacagccagctg
cagcagcacgtagagaagtccggttccctcgccccctccacgcctctgactggacgggtt
tacctgaaggagaaggacctgctcgtcacgcccgtctcctcggcgacgcagagcgtcagc
cggctgcagagcatggtggccgggctgaggacggcgcccagcgaccacctgatgcagata
ttcaagtcgtgctccagagatccgtctgagtccatcctgaccagagtgaagactctggga
caaaccttcaaagaacattacaccaacgactcggaggacacacctggatctcacatagac
tttgcagagaatcgactgaaactggccgagatcctttactacaagatcctggagaacgtc
atggctcaggagaccaaacggctgcagggcaaagacatgagtgtgttgttggagcaggat
atcttccactgctccctgatggcgtgttgtctggaggtggtgttgttctcctacagctcc
cagagaaccttcccatggatcatcaccgtcttcaaactggctccgttctacttcttcaag
gtgatcgaggtgtttatccgctcggaggaaggtctgtccagagacatggtcaaacacctg
aactcgatcgaggagcaggtcctggagagccgagcctggacctcggactcggccctgtgg
agcgccctggaggctgctgggaacaaagtccccacagtggaggaggtgaacttttcctcc
agtctcgactccagctctggttctggttccatcagcggagttcagccccacctgcctctg
gtcgccctctctcccatcatccacccacgaatcagggagttcagatccggtctcggcagc
gcccgaaaagacgttcctccctctcctctgtccgtccacgacaggtacagctctcctgcg
gccggcagcgccaagcgccgtctctttggcgatgaccctccgaacctgagtctgagccca
gtgttgtctccggcgaagaggctgacgttcggctcaagcaacacactgaagatcggaggc
cagggatcccagaccaccgtggtcagcatcccgctgcaaggtgtgagtaacgaccgcacg
atcacgctgatcccggttcagccatgtggcgactcctctggcgctgtcactgctcagttc
ctgctcaccgcctccccgagccgacccacccctgcacctgtgacctccgacccccagaca
ggaaacggtcggccgcgacgcaccggatcgctcgctctgttcttcaggaaggtgtatcac
ctggccagcgtccgtctgagggatctgtgcgtgaagctggacatttcctctgagcttcgt
gggaaaatctggacgtgtttcgaacactctctggtgaactgcaccgatctgatgaaggac
cgacacctcgaccagctgctgctctgcagcatttacatcatatccaagatcacaaaagag
actcacaccttccaggacatcatgaagtgttaccgcagccaaccacaggccggcagccat
gtttaccgcagtgtgttgctgcgtcacactctcagggagcaggtggccgatgaaaacatg
gaggtggatccggtctctggaggagaatctgcggagaaaaccaatccagtctcaggagag
tcaaactccagccaatcaggcgaggaggaacgtggtgacctcatccagttctacaacacc
gtcttcatcctgaagatgaagagcttcgcgctgcgatacgccacccacgacaaccgggtg
gacgctcctcctctgtctccgttcccgtcggtccgggctcagcctctctctcctcgccga
gtctcccagagacactcgctgtacgtctcccctcacaagaactcggcgggatgcctgacg
ccaaactcctacacctacaggatcaacagcagcccgtccaaggagttatcggacatcaac
cggatgatcaggcagggctgtgtgagcaggaagagggccttcaccatggagggcgacgtg
atgatgtcaccggcggcatgtgactcccccagtaagagggcgtgtccggagaacggcagc
agcccggacgtgctgctgaagcggctgcaggacgtcgtgtccgagcggcagagtcgctga
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