Lates calcarifer (barramundi perch): 108901601
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Entry
108901601 CDS
T04895
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108901601 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108901601 (mid1)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108901601 (mid1)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108901601 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4_4
TRIM_CC
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
108901601
NCBI-ProteinID:
XP_018558655
UniProt:
A0AAJ7VKK3
LinkDB
All DBs
Position
LG1:16656538..16682783
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AA seq
689 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPNETRRERAAPDSKAMTSPIDRVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPLLDSHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALGDRYDKLKKSSGRFLCVGRDHSHQEA
DQQALDSNLSNLIKRTSELESLMGKLIQTCQHVEVNASRQENKLLEECELLINIIQQRRQ
IIATKIKEGKSMRLRKLAQQIASCKQCIERSSSLISQADQTLKETDHARFLQTAKSICER
VSMATASSQILLPEINLNDTFDSFALDFTREKKMLESLDYLTAPNPPVIREELCTASYDT
ITVHWTSDDEFSVVSYELQYAIFTSQSNVVSLCNSADSWMIVPNIKQNHYTVHGLQCGTK
YIFIVKAINQAGNRSSEPGKLKTNSQPFKLDPKSAHRKLRVSHDNLTVERDETSSKKSHS
QDRFSSHSSYGVTGNVYIDSGRHYWEALIGGSTWFAVGIAYKSAPKHEWIGKNSASWVLS
RCNNSWVVRHNSKEMPIEPSPHLRRLGVLLDYDSGSLSFYDAVGSQHLYTFDIAFAQPVC
PVFNVWNRCLTILTGLPIPDHLEGTDYNN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgtctggagctatttgaggacccg
ctgctcttgccctgtgctcacagcctttgtttcaactgtgcccatcgtatcctggtctcc
cactgcacccccagcgagccgattcagtccatcagcgcctttcagtgcccaacctgtcgc
tatgtcatcaccctcaaccagagaggcctagagggactcaaacgcaacgtgacattacag
aacatcatcgaccgctaccagaaagcttctctaagtggacctaactctcctaacgaaact
cggcgcgagcgagctgcccccgacagcaaagccatgacatctcccattgaccgggtgcag
tgtcagttctgtgagcaggaccctccgcaggatgccgtgaagacctgcgtcacctgtgag
gtgtcatactgcgatgagtgtcttaaggccacccaccccaacaagaagcccttcacaggc
caccgtctaattgagcccttgctggattcccatctgcgagggcttatgtgtctggagcac
gaggatgagaaggtcaacatgtactgtgtgacagatgaacagttgatctgtgcattgtgt
aagctggttggccgacacagagaccaccaagtagcagccctcggtgacagatatgacaaa
ctgaagaaatcttctggccgctttctctgtgtggggcgtgatcattcacaccaggaggca
gaccagcaagccttggattccaacctcagcaatctaatcaagaggaccagtgagttggaa
agtctgatgggcaaacttatccaaacctgccaacacgtggaggtaaatgcatcgcgacaa
gaaaacaagctgcttgaggagtgtgaactgctgattaatatcatacagcagcgaagacaa
atcatagccaccaagataaaggagggaaagtccatgcgactgaggaaactagcccagcag
atagccagctgcaaacagtgcattgagaggtcctcctccctcatctctcaagccgaccaa
accctcaaggagacagaccacgctcgcttccttcagacagctaaaagtatctgtgaaaga
gtatcaatggcaacagcatcctctcaaatcctgctaccagaaattaatctgaatgacact
tttgatagttttgctttggacttcacaagggagaagaaaatgctagagagcttggattac
ctcacagcaccaaatccaccagtaatccgcgaggaattgtgtacggcttcgtatgacacg
atcacagttcactggacatcagatgacgagttctctgttgtatcatatgaacttcagtac
gccatcttcaccagccagtctaatgttgtcagtttatgtaactctgctgatagctggatg
attgtaccaaacatcaagcagaatcactacactgtgcacggactccagtgtggcacaaag
tacattttcatagtgaaagccataaaccaggctggaaaccgcagcagtgaaccagggaaa
ctcaagacaaacagtcagccatttaagttagacccaaagtctgctcaccggaaactgagg
gtgtcccatgacaacctgacagtagagagggacgagacatcgtccaagaagagccacagt
caggaccgcttttccagccacagcagctatggtgtcacaggaaatgtctacatcgacagc
ggccgccattactgggaggctctgatagggggaagcacgtggtttgcagtgggtattgcg
tataagtcagcgccaaaacacgagtggatcggtaaaaactctgcctcttgggtgctgtct
cgctgcaacaactcgtgggtggtgcgtcacaacagcaaggagatgcctattgagccttca
ccccacctgcgacgtcttggagtgttgctggactatgactctggatctctgtccttctac
gatgccgttggctctcagcacttgtatacatttgacatcgcctttgctcagccagtttgt
cctgtgttcaatgtgtggaacaggtgtttaacaatcctcacgggactgcccatcccagat
cacctagaggggacagattataacaactga
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