Lates calcarifer (barramundi perch): 108901664
Help
Entry
108901664 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-23
KO
K16507
protocadherin-16/23
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
108901664
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108901664
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Cadherin related
108901664
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_CLSTN
Ig_Cad99C_N
Cadherin_2
Ig_BT4661_3rd
Cadherin_4
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
108901664
NCBI-ProteinID:
XP_018558735
UniProt:
A0AAJ7QKS2
LinkDB
All DBs
Position
LG5:8866812..8896462
Genome browser
AA seq
3274 aa
AA seq
DB search
MGRKNATTWFPWTLVLSLLFCARSLGQVFNLTLSVKEGLPAKTIVGDLGAGLSRPSTGFF
ISESRDSYVFRDLEIDADTGIISTAVILDRESRDKYEFVAATLTGEMIKVRIEVKDVNDH
SPVFPSEEFDLEISELSPPGSRFQLEGAKDQDEGEFGTQGYRITEHDMGELFHLDYRSGS
ENHMNLDLILNSKLDRETQDFYSLTIEAFDGGIPAKTGTLQVNIHVLDENDNPPVFNQTE
YHALVPEDAQVTSSVCQVHATDLDLGNNGRITYEINRRQSDPNEVFSINDTTGVVYLSKP
LDFEAQAFHELIISARDNGAQPEFSSTFVGVKVLNINDNSPSISILFLSETGDAVVSEAA
AVGDYVARISVSDPDVEEERVTVTLEGGDGKFNLKQTDDFLYALCVNAELDREEKDLYEL
RVQASDSGSPPLSSEMVFLLKVADTNDCHPQFEKDVYIVSISEDAPLGSSLIRMQARDSD
EGVNSDIRYSILKSNQDSLISIDPELGLVTTAASLDREMQEEVWFLVVAADGGEPALSST
ATVTVLVEDVNDNEPVFQQQLYNVSIPEHSDIGSCFLQVVATDADSPDFGTVLYSLSDGF
DKQDKHPLFQIHPQTGELCVSQDIDRDTGQTVHDILIKAEDPGGLSAQTYVHIEIEDLND
NAPVFNPDEYTMSISSHAQPGTEILNVIATDRDSGRFGQVTYDILPGDMSSLFALDKQTG
MLFLTSTLTHLGAASMKLSITAQDGEGLASVRPAEVTINVLRSAQAPAVFQRSRYTFTVP
EDAPTGTSVGTVEAINPAGSEESVSYRISSGDPQGLFSVHPKSGLISNVKPLDHESQPYA
LLVLQSYTDTSPVYSTTQVNITIADVNDNAPVFPKLSDTLTVSQNTLPGTVLFIAHAHDY
DSGANGRVQYYLKTSRNGTFVVDPDLGTVTLNQSLQKDHQQRYSLEIVAKDEGELSLSSM
LTLTVNVDRTAAEDSLAFETLVYQVEIGEGYRKDSRVIQVRAHRTWGAHMSNSGLTYSLE
AEAGFPPAPFRVHPTTGWLYLSHNLDYETESTYRFRVLATAREASLANTTATATVVVLVL
DINDNAPMFSSEVYYFTVSEGSAPQGLVGTVRAVDKDSGKNAQLSYLLLSDGKFFRINAK
TGEIINWVALDQEQHSQHSLKVMVTDQGQPRLNATATVHILVTDVNDNAPQFTHLPASKE
LNVQIWAGLSTGSLVTNMFAKDLDAGENGTVTFSLVTADFDDKDLGHFEIDSKSGDIRTT
ELFTQNTELYYTLKVTAKDSGATPQEDTAVIHVQVHGLEALYGRHMADHQIVRRFTVREN
TEPATVIGSASVSDKGKFHYSISEGDGSVHFGIDGSSGDIYINQPLDYESAMQYFLMVRA
EDVGLAPGVNVSVLVSVIVEDVNDHTPWFPDKLVMFGLREDATVGSLAFAFHARDADGTF
SNSALRYTLTFDPELGESSSRFPFQINPHTGSLTVAAPLDRETTPSFAFTVTATDQAKKK
DERKQASVTAQVFLLDVNDNRPVFVSVDTVQVMEDAQLGSLLHHFVAIDGDKGENGLVSY
IIIAGNKKGFFTLEEKTGLLFLSAPLDYERQRFHRLTVRAVDHGLPSLSSTQTLTVEVGD
VNDQPPVFSQSIYNASVAENRDPGEPVVRVSATDRDSEENAVVWYSLLPGPGYELFSINP
YTGLITTTSYLDREQQQHYTLRVQARDSSTRPLSGTATVQCSVLDDNDNPPEFMHSSFQI
SLPENLPPGVIHTAQASDPDHGENGTIHYSILGEDYRGRFTINSHTGALSTTQVLDREDR
QNYTLNIQARDYGPTPLSSSTQLQLVLLDQNDNIPSFTHESYHASISEGLPVGAEVLHVS
AFDPDEGSNGDITYSLTEDSSQGAFSVDSFTGVIRTTRALDRETRAQYTLRAVATDGCTQ
GPLSSMASVTIQVEDVNDNIPVCDQNPINAWVSMRTLPNEIITTVTATDGDQGENGTIHF
MLFDEENLFDINTETGEISLRRRVRAGFSGRKLQVVVSDRGRPALTSTCLVFIHLKGEHE
GLQFTNKVYNTTVKENSRAGTWIAKVEASDQTNSRQRITYTIFSGNENHIFSINRHTGEI
RVQKDNSLDFEVNPQIQLVVLADNGLQTAHCRVAITLLDINDNAPLFEHSSYRTAVWEGQ
VHNTYIMQVFASDADSGMNGQMEYSIVSGNHNDAFILDSVRGILATNVLLDREITPSYKL
VLQAADRGNPPLSSTATIRVQVVDVNDNSPAIPPMEPVVIAENLPAGYMVTMVTANDVDL
SSTITYSFSDNSSTNSPFAIDRYTGVVTLTQALDYEEQTEYTLTVWASDSLHQTSGEVRV
QVLDVNDNAPVFTQVSYQVELSELVSADMLVVSVSATDRDSGLNGRITYRLLSSPLQGFY
IQPDNGSVFTNKPLKAITNNNLIHLLVEARDGGDPVHSTITSIDILILDTNDHAPLFHQD
IYTLTVPEDTPTDTTLLTLSAEDKDWSPENTHLDYAIIRGNEERRFCLEVKMIQVENQMK
NLGKLVLCNPLDRETTESYALTVSVSDRGTPPLNSSAVVMITVTDCNDNAPIFSSSEYHA
HVSENSQVGTRLVQVTAQDPDLGTNGLLHYDIVSGNSKGHLKLDPQSGVLVVNHPLDYEE
DSKYTVTIRASDGGESSEEHNVAFTVVFITVLDENDNTPYFMFSTINCSVLENLPAFTHT
CSVHAVDNDLGPYGQLTYSILSSCFMDYGSGSPERKEAFAIDPLTGDIHTRQTFDFERES
EYCFLVEARDKGDKAATVRVQVNIKGVDEFSPIFTQKQYHFLLPENVKAGETVGYVMAMD
HDGGVDGIVEYSLVNSSPFFSINKTIGAIFVTGPVFRRRGHASEDMVELVVSAGSPRLGS
RSTTCSVFVNISSSAEALTGVPYDAHMLSLSVSLTMFLLILVIFVGMVLRFKIKEAAIKK
AAAIAANLNHSTGSFSRSNGQTQSAISLQEMKRPSILVTKRDISKPYNPSDSSGRGSAEG
ETAEDQEIKWINEYPCRKRDESVKVTQSTDIPDAALPGDNISCHSINVGPEHLLSVNKCL
VSGMASTESLHHFKEEGGGEGLLPAILRVRDLEEHMGTKGYAPLPENHGSADSLSSLVCL
EEQLQGSYSWDYLLDWEPRFQTLAAVFTDIGMLPDEELQGGREDLAAESSCLMYPPPLIT
GVAQPGIRTVPPRKLGRVPSLSRKPSCRKYAYSPLARNTGLTPSAMTPNFSPSLSSLTMR
TPNASPVVSETGVGGIRLDSGPLTASLLEAEIQV
NT seq
9825 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgcaaaaatgccacaacctggttcccctggacccttgtcctgtcgctgcttttt
tgcgcgcggtcactcggacaggtgttcaacctgacgctctccgttaaagagggtttgccc
gctaaaaccatcgttggagatctgggagcggggttaagcaggccaagcaccgggttcttc
atctcagagagcagagactcgtacgtgttcagagacttggagatagacgcagacacgggg
atcatctccacagctgtgatcctggacagagagagcagggataagtatgaatttgtcgca
gccactctgacgggtgagatgataaaagtgaggatagaggtgaaagacgtgaatgatcat
tcacctgtgtttccatcagaggagtttgacctggagatatcagagttgagccccccaggg
agtcggtttcaacttgaaggtgctaaagaccaggatgagggtgagtttggtacgcaggga
tacaggatcacagagcatgatatgggggagttattccacctggattaccgcagcggatct
gagaaccacatgaacctggatctaatccttaacagcaaactagacagagaaacacaggac
ttctactccctgaccattgaggccttcgatggtggcatcccagccaagacggggaccctt
caggtgaacatccacgtcctggatgagaacgacaacccacctgtgttcaaccagactgaa
tatcacgccttggtgcctgaggatgctcaggtcacatcctctgtttgtcaggtgcacgca
accgacctcgacctgggcaacaatggcaggatcacttatgagatcaacaggcgtcagagt
gacccgaatgaggttttctccatcaacgacaccacaggggtggtttacctcagcaagcca
ctcgatttcgaggctcaggcatttcacgagttgatcatcagcgcaagagacaatggggct
cagcctgagttcagcagcacttttgtgggtgttaaagtgcttaacatcaacgataacagt
cccagcatcagcatcttgtttctcagcgagacaggagatgcggtggtgtcagaagcagca
gccgttggggactacgttgccaggatttcagtgtcggaccccgacgttgaggaggagagg
gtcactgtcacgctcgagggaggtgatgggaagttcaatctgaagcagacagatgatttt
ctgtatgctttgtgtgtcaatgcagaactggacagggaagaaaaggatctgtatgagttg
agggtgcaagcgtcagattctgggagcccacctctcagcagcgagatggtcttcctcctg
aaggtggctgacaccaacgactgtcacccacagtttgagaaagacgtgtacattgtcagt
atctcagaggatgctcctctcgggagttccttaatccggatgcaggcccgagatagtgat
gaaggcgtcaactcagacatcagatactccatcctcaagtccaaccaagacagtctgatc
agcatcgacccagagttgggcctggttaccacagccgcttctctggacagagagatgcag
gaggaggtgtggtttctggtggtggcagcagacggaggggaacccgctctgtcgtccacg
gctacagtcactgtgctggtggaagatgtcaatgacaatgagccggtgttccagcagcag
ctgtacaacgtgtccataccagagcacagtgacatcggaagctgctttttacaagttgtt
gccacagatgcagacagccctgactttggcacagtgctttactctctgtctgatggcttt
gacaagcaagacaaacaccccctcttccaaatccacccacagactggagagctgtgtgtc
tcccaggatatcgatcgagatacgggacagacagtccacgacattctgatcaaagctgaa
gatccaggaggcctgagtgcacaaacctacgtgcatattgagatagaagacttgaatgat
aacgctccagtgtttaaccctgacgagtacaccatgagcatcagcagccacgcacaaccc
ggcacagaaatcctcaatgttatcgcgaccgacagagattctggcaggtttggacaggtc
acctacgacattctccctggtgacatgtccagtttgtttgcactggacaaacaaacagga
atgctcttcctgacctccactctgacacacctgggtgcagccagcatgaagctctcaata
acagcacaggatggggagggcctggcctcggtcagacctgcagaggtcaccatcaatgtc
ttacgcagtgctcaggctccagctgtgttccagaggtcacgctacacctttactgtgcct
gaggatgcaccgacagggacttctgtggggacagtggaggccataaacccagcaggttct
gaggaatccgtatcctaccgaatctcctctggagatcctcagggtttgttctcagttcat
ccgaagtccggcctgatcagcaacgtcaaacctctggaccacgagtcacagccatacgct
ctgctggttcttcagtcctacaccgacacgtctcctgtttacagcaccactcaagtcaac
atcactatcgctgatgttaatgacaacgcacctgtcttccccaaactcagcgacaccctc
acggtgtcccaaaacactcttcccggaacagtgttgttcatcgctcatgcgcacgactat
gacagcggtgccaatgggagggtgcagtattaccttaaaactagcaggaatggtacattt
gtggttgaccccgacctcggcacagtgacattaaatcaaagtttgcagaaggatcatcag
caaaggtatagcctggagatcgtggctaaagatgaaggagaactttctctgagctccatg
ctcactctcacagtcaacgtggaccgcaccgctgctgaggacagcctggcctttgagact
ttagtctaccaggtggagataggtgagggataccgtaaagattcgagagtcatccaggtg
agggcgcaccggacctggggagctcacatgtcaaactctggcctcacctactccttggag
gcagaggctggattccctcctgctccatttcgggttcacccaacaacgggatggttgtat
ctgtcccacaacctggactacgagactgagtccacgtatcgttttcgagtgttggccaca
gccagggaggcctcactggcaaacaccacggctacagccacggtggttgtgctggtgttg
gacatcaacgacaacgctccgatgttcagcagcgaggtctactacttcactgtatcagag
gggtcggcacctcaaggcctggtgggaacagtcagagctgtggataaggactctgggaaa
aatgcccagctgtcatacctcctgctgtcagatgggaagttcttccgtatcaacgctaaa
acaggtgaaattatcaactgggtggcactggaccaggagcagcacagccagcacagtctg
aaggtgatggttacagatcagggtcaacctcgtctcaatgccactgccactgttcacatc
ctggtcactgacgtcaatgacaacgctccacagtttacacacctgcctgctagcaaagag
ctgaatgtgcagatttgggctggtctgtcaacaggatccttggtgaccaacatgtttgcc
aaagatttggatgcaggagaaaacggaacagtcaccttctcactggtcacagctgatttt
gacgataaggatcttggacactttgagattgacagtaaaagtggagacatcagaacaaca
gagcttttcacccagaacactgaactgtactacactcttaaagtaactgccaaggacagc
ggagccacacctcaggaggacactgcagtcattcatgttcaggttcatggattagaggct
ctgtatggccgccatatggctgatcaccagattgtgaggcgcttcacagtgagagagaac
acagagccggcaactgtgatcggttccgccagtgtttcagataaagggaaattccactac
tccatctctgagggggacgggagcgttcactttggcatcgacggctcctctggtgacata
tacatcaaccagccgctggactacgagtccgccatgcagtacttcctcatggttcgagct
gaagatgtcggactcgctcctggagtgaacgtgtccgtgctggtcagtgtgatagtggag
gacgtaaacgaccatactccctggttccctgataaactggtgatgttcggcctgagggaa
gacgctacagtcggctcgctggcatttgcttttcatgccagagatgcagatgggaccttc
tccaacagcgccctccgctacactctgacctttgaccctgaacttggtgagtcatcgtca
cgcttcccctttcagatcaaccctcacacagggagcctgacagtggcagcacctttagac
cgtgagaccacccccagctttgccttcaccgtaacagccaccgaccaggcaaagaagaag
gacgagcgtaaacaggcgtcagtgacggctcaggtctttctgctggatgtgaacgataac
cgaccagtgttcgtgtcagtggatacagttcaggtgatggaggatgcacagctggggagt
ctactgcatcattttgtggccatagatggagataaaggtgaaaatggacttgtctcctac
atcatcatagctggaaataagaagggattcttcacactagaggagaaaacagggcttttg
tttctctctgcccctctggactatgaaagacaacgtttccaccgtctgaccgtccgtgca
gtggaccacggcctgccctcgctctcctccacccagactctgacagtggaggtgggcgat
gtgaacgaccagccgcctgtcttcagtcagagcatctacaacgccagtgtggccgagaac
agagatcccggagaaccagtggtcagggtctctgccactgacagggactcagaggagaac
gctgtggtgtggtacagtctgctgccgggcccaggctacgagctcttcagcatcaaccct
tacaccggtctcatcactaccacctcctacctggacagagagcagcagcaacattatacc
ctcagggtccaagctcgcgacagcagcacgcggcctctttcgggcacagccacagtgcag
tgctctgtgctggacgacaacgacaaccctccagagttcatgcattcatccttccagatc
agcctgccagaaaacctgccccctggagtcatccacaccgctcaggcctctgatccagac
catggggaaaatggaactatacattactccatactaggtgaggactacagaggccgcttc
accatcaacagtcacacaggtgctctcagcaccacgcaggtccttgaccgtgaggacagg
cagaattacacactcaacatacaggcccgtgactatggccctaccccgctcagctcctcc
acccaactccagctggtgctgctagaccagaacgataacatcccatctttcacccatgag
agttaccacgcctccatcagcgagggcctacctgttggagctgaggtcctgcatgttagc
gcctttgatcctgatgaggggtccaatggtgatataacatactctctgacagaggacagc
agccagggggctttctctgtggacagtttcaccggagtgatccgcaccaccagggctctg
gacagagagaccagggctcagtacaccctcagagctgtggctactgacggctgcactcag
ggacccctgagctccatggcatctgtgaccatacaagtggaggacgtcaacgacaacata
ccagtctgtgaccagaatcccataaatgcatgggtttccatgaggactctaccaaatgag
ataattaccacggtgacggcaactgatggcgaccagggtgagaatgggacaatacatttt
atgctgtttgatgaggaaaacctgtttgacatcaacactgagacaggagagatttcactg
aggagacgtgtgagagcaggtttctcagggaggaagctgcaggttgtggtttcagaccga
ggacgacctgctctgacctccacctgtttggtttttatccacctgaagggagaacatgaa
ggacttcagttcacaaacaaagtgtacaacactactgtcaaggagaacagtagagctggc
acttggattgcaaaagtagaggcaagtgaccaaacaaacagcagacaaaggatcacctac
acaatatttagtggcaatgagaatcacatcttctccattaaccgtcacacaggtgagatc
cgggtgcagaaagataactctctggacttcgaggtgaacccccagatccagctggtggtg
ctggctgacaacgggcttcagacggctcactgcagggtcgccatcaccctgctggacatc
aacgacaatgcgccactgtttgaacacagcagttacagaacagctgtgtgggaggggcaa
gtgcacaacacctacattatgcaggtgtttgcatctgatgctgacagcgggatgaatggg
cagatggaatactccattgtgtctggtaaccataatgacgcatttatcttggactctgtg
cgagggatccttgctaccaatgttttactggaccgtgagatcactccatcatacaagcta
gttctgcaggcggcagacagggggaaccctccactcagcagcactgccaccatcagggtc
caagtagtggacgtcaacgacaacagccctgctattccccccatggagcctgtggttata
gcagagaatctgccagcaggttacatggtcaccatggtgactgcaaatgatgtggacctg
agctcaactatcacctacagtttttcagacaacagtagcacaaatagtccctttgctatt
gaccggtatactggtgtggttactctaacacaagctttggactacgaggagcaaacagag
tacactctgactgtttgggcatctgactccctccaccagacctctggggaggttagagtt
caagtgcttgacgtcaatgacaatgctccggtcttcacccaggtctcctaccaggtggag
ctgtcagagttggtctcagcagatatgctagttgtgtcagtgtcagccactgacagagac
tctggactcaatggcaggataacatacagactgctttcatctcctttacaaggcttttac
atccagccagacaatgggtctgttttcaccaataagcccctaaaggccatcacaaacaac
aatctgattcatctcctggttgaggcaagagatggaggcgatcctgtacactccactatc
acctccatagacatactgattctagacaccaacgaccacgcacctttgttccaccaggac
atctacaccctcactgtcccagaagacacccccacagacaccaccctcctgacgctgtct
gcagaggataaggactggagcccagaaaatacccatttagactacgccatcatcagggga
aatgaggagaggcgattctgtctggaagtaaaaatgattcaagttgagaatcaaatgaag
aatttaggaaaacttgttctttgtaaccctttagaccgtgagaccacggagagctacgca
ctaacagtgagtgtatctgaccgaggaacgcctccactgaacagctctgccgttgttatg
ataacggtgacagactgcaatgacaatgcccctattttttcgagttcagagtaccatgcg
catgtgagcgaaaacagccaagtaggtaccaggttagtccaggtgactgctcaagatcct
gacctgggaaccaatggcctgttgcactatgacattgtctctgggaacagcaaaggtcac
ctcaagctcgaccctcagtctggcgttttggtggtcaaccacccacttgattatgaggaa
gactcaaaatacactgtcactatcagagcatctgatggcggcgaatcttctgaagaacat
aatgttgcttttacagttgtattcatcacagtgctggatgaaaacgacaacactccatac
ttcatgttctctaccattaactgttctgtgttggagaacctcccggcatttacccacacc
tgttcagttcatgctgtcgacaatgacttaggcccctatggccagctcacctactcgatt
ctatcttcttgcttcatggactatggcagtggcagccctgagaggaaggaggcctttgcc
attgaccccctaacaggcgacattcacaccaggcagacatttgattttgaacgtgagagc
gagtattgctttttagtggaagccagggacaaaggtgacaaagcagccacggtgagagtg
caggtgaacatcaagggagtggatgagttcagtcccatcttcacccagaagcagtaccac
ttcctcctgccagaaaacgtgaaggctggagagacagttggttacgtgatggcaatggac
catgatggaggggtggatgggatagtggagtactcccttgtgaactcatcaccatttttc
tcaataaacaaaacaattggtgctatctttgtaacaggtcctgtgtttcgcagaagaggc
catgccagtgaggacatggtggagctggttgtatctgcaggtagtcccagactgggctcc
agatctaccacgtgctcggttttcgtcaatatctccagctcagcagaagcactcacaggg
gttccctatgatgcgcatatgctcagtctgagtgtctcactcaccatgttcctcctaatc
ctcgtcattttcgtgggcatggttctcaggttcaagatcaaagaagccgcaatcaaaaag
gcagctgccattgctgcaaacttgaaccacagcacaggctcattcagtagatccaatggc
caaacacaaagtgccatctctctgcaggagatgaaacgacccagcatcttggtgaccaag
agggacatatcaaagccgtataatccgtcagactcgagtggccgtggatcagcagaaggt
gagacagctgaggaccaggagatcaagtggattaatgaatacccctgccgtaaaagagac
gaatctgtcaaagtcacccagtccaccgacatcccagatgctgccttacctggagataac
atctcctgccactctatcaatgtagggccggagcatcttttatcagtcaataaatgttta
gtctcaggaatggctagcacagaaagcctccatcacttcaaagaggaggggggaggtgag
gggctacttcctgcaatacttagggtaagagatttggaggagcatatggggacaaaaggg
tacgctcccctccccgaaaaccacggctcagccgattctctctcttcgctggtgtgtcta
gaggagcagctgcagggcagctacagctgggactacctgttggactgggagccacgcttc
cagactctggccgccgtcttcaccgatattgggatgctccctgatgaggagctccaaggt
ggccgtgaggacttagcagcagagtcaagctgtttaatgtacccaccgcctctaataaca
ggagtggctcagcctggcatcagaactgtacctccgcgaaagctggggcgtgtgccaagc
ctgagcaggaagccctcttgccgcaaatatgcatattcccccttagccaggaacactgga
cttaccccttcagccatgacgccaaatttctccccatcactgtcttctctcaccatgagg
acccccaatgcctcaccagttgtctctgagactggggtaggggggatcagacttgactca
gggcctctcactgcaagcctgttagaggcagaaatacaggtgtag
DBGET
integrated database retrieval system
