Lates calcarifer (barramundi perch): 108901855
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Entry
108901855 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lcf04054
]
108901855
Pattern recognition receptors [BR:
lcf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
108901855
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_NXF1-5
Atypical_Card
NOD2_WH
AAA_25
Zeta_toxin
LRR_8
AAA_30
AAA_22
GvpD_P-loop
Motif
Other DBs
NCBI-GeneID:
108901855
NCBI-ProteinID:
XP_018559025
UniProt:
A0AAJ7QL34
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All DBs
Position
LG10:complement(22397241..22427044)
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AA seq
1906 aa
AA seq
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MDEEVDPGDENVNSVLAQESSELFDVLSCQSPTVIMRLCQMMPSGAGWNMGHLAPTSSSA
AVTERIKAMLEYFRVASAADCRNFLQSMCILCENIPMRLESRLMSVAGYANNVRFPTLTD
CSPLSPSEQQLIKRPRIDHWEQYIASVVSLMLRKWERLSEGLVREVQLENVWVSLRTTNR
GRDRPDQTPGPADRGSRTPEPDGDFGSLESKVTLETFLQGCAGKVTVVAGQPGSGKTLLM
SCLGQQWAHGLGPIPSSYLFVLLEFRQLNLISSPLSLSELLLRYYLPPKRGDNEKRAIVD
YLLSNPEQSCWVLDGYDEFNSKLTRQEVQRKPLDPEKALPVADLISGLLNRQLLPGCTVL
VTSRVRDVRDLEGISDKVGQLLGWDRYEIKEYVVNFFGVKGDSANRALGVQAADLLLSSR
HLLAMSYLPALCNICCICLKHLLLEAETKLQPGDREEERGNETRKKATEKELKEGQIAGE
RRGGSQDITRDGTNGRAQLPPTPAQIPSTLTQVYLTVLGAFLSHHSGKKGNSDKAKTTKP
PQSTVCRLIAQSQYQSELCELSQLAWRGLEENKVLFLKEDIPQDVLEFSVTTGLLSQVEL
RLEDGILVNAYCFIHLTIQEFLAALRIMTSNDVSDAQLRKRFSLKTRWMTKSDQRTVFTD
SLHTFVCGLASQHCTAALLQMARASGGTGVQTWVQKRQALVLKLLKNLCHSNTLTGPKIL
ELCHCVQESQDHQLAKEVVGTRPTLELRNIRLLPNDIDALAFVVNSVGDNGIGLDFGACS
MELECLDVLPRCQYIHYLSFRSRKYGDKFAEKLSSILPELTTLRKLEFCGASLTATGAAS
LASALEKCPDINEINLSDNSLKDEGMQHIADIFTKLPRLASVMLSRNNSSLKAVDYLIGK
MSSCLNIQHLHADAMKEVIVNFSQLSDMSSYKTKSEPTISLLNQKWSKPEMQKVAKSLAC
CPTLSVLDMSGGQWNVEILRTLTQFLPKFSVTNKIILNDSCSSVEGLVVLTGLLSNCPAV
VELHISLQSSPEPVQVSIVFSGGREKPAGQTSKTLCLSCCGLLHIDLERVWRSLGTSCDL
TVLDLSSNRLGNKGLRKLLDVLPHLSNIQEINASNNGVSMEGVVMLAGTLGSSNSLREIH
ISNGGREQVILKFCSDKSDDKQQLRMFRLNNSILLPSDVTTLCRRLVECRSHLELDLSHS
SLEDEAIKNLLKVLPEMVSLQRLNVGNSISSITGALILVSCLTVSQRVTSVELRPQSEGF
IHFDRVKTEHASCRLTHFSLDCNNLERLTEILEQGPPLFDLDLSSNQLKDEGVKCLMDSL
PRLKITSFVNLSNNSLTQQGLLYVASTLCTCDNISGVEVSMGAEERCLIWFRHHRDSEKT
LSIRESRLEREHLVRLAEISSNCPNLTKLEFKNNLLHSEWIEDFVKELNIGQRGCSVSIE
ECWIRAEKAIHLVSRCLELSSNIQTIKVDQTTLHLSLMKPTELMSVSLVDCALEGHQLAS
MWTIIQRCPSLTELDFSINSLGIEGAESLSSVLPSLPNLTSLSIVSKETCKAVAEKLSEA
LLQSTTVQCLNLSGHVISDTAAQTMTRMFPRLRSLNLSHCSWSPAEGLQLVTAALRQCVS
LEGLCLDSVHLDENSRVCLAQALMNIHSIRRLKLNKIGTVMEPPEANSVLDLLHAMEGLK
QMQEIELKGWRLADRAVEQMTRLFPVWTELRKISLSKTLNGDQSGDKLLGALISCSHLEE
LYLCGNGLGDLTAARMALVLPSMTHLTVLDISENTIGCEGSVSLSKAIICMKNLTKIQLT
SVGTSELCAVASSLAHCPLIQDVGLGWNNCGDEVALELARVLPFCQKLNRIDLEANIVTV
FGVDALVRALQSCPAVQLIKLWRNKVHPNEAHRLSLKDRRLNFSST
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggaggttgaccctggcgatgaaaatgtgaactccgtcttggctcaggaatct
tcagaactgttcgatgtccttagctgtcagtcacccacagtcataatgagattgtgccaa
atgatgcccagtggtgctggatggaacatgggccatctggcccccactagctcttcagca
gccgtaacagaacgcatcaaagccatgctggagtacttcagggtggcaagcgctgcagac
tgccgcaacttccttcaaagcatgtgtatcttgtgtgagaatatccccatgcgcctggag
tcaaggcttatgtcagtggccggatatgcaaacaatgtcaggtttcccactctgaccgac
tgttcaccattgtcaccttcagagcagcagcttatcaaacgcccacggattgaccactgg
gagcagtacatcgcctcagtggtgagtttaatgttgaggaagtgggagcgactgagtgag
ggcttggtgagggaggtccagctggagaatgtgtgggtcagcctaaggacgacaaacaga
ggcagggacagacctgatcaaactcctggaccagcagacagagggagcagaacaccagag
cctgatggggattttgggtctttggagtctaaagtgacactggagaccttcctccaagga
tgtgcaggaaaggtgacagtggtcgctggccagcctggatcaggaaaaactctgctgatg
tcttgtttaggacagcagtgggcacatggtcttggccccatcccttcatcctacctgttt
gtcctgctagagtttcgtcagctcaatttaatatccagccctctctccttgtccgagcta
ctattgcgatactacctccccccaaaaaggggtgacaatgaaaagagagccattgtggat
tacctcctttccaatccagagcaaagctgttgggtgctggatggctatgatgagtttaac
agcaaactcaccagacaagaggtgcagagaaaaccactggacccagaaaaagctctacct
gttgcagaccttatctcagggttattaaatcgtcagcttcttccaggatgcactgtgctg
gtcacctctcgtgtacgtgacgtcagagatttggagggcatatcagataaagtggggcag
ttactcgggtgggaccgctatgagatcaaggagtatgtggtcaacttctttggggtaaaa
ggtgactcagcaaacagagctctcggggtgcaggcagcagatctccttctttccagtcga
cacctcctcgccatgtcatatctccctgccctctgcaacatctgctgcatctgtcttaag
catctactgctagaggctgaaacaaaattacaaccaggagacagagaggaagaaagagga
aatgagacgaggaaaaaagccacagaaaaggaactaaaagaaggacagattgcaggggaa
agaagaggagggagtcaagacataacgagggatgggacaaatggcagagcccagctacct
cccacacctgcccagataccctccacccttacacaggtctacctcactgttctcggtgca
tttctgagccatcattctggtaaaaaaggaaacagtgacaaggcaaagaccacaaaacct
ccacagagcactgtctgtagactgatcgctcagagtcagtatcagtctgagttatgtgag
ctaagtcaactggcttggcgaggtttagaggaaaacaaggtcctcttcttgaaagaagat
attcctcaggatgttttggagttttcagtcaccacagggctcctttcacaggtggagctc
agacttgaggatgggattcttgtcaatgcctactgcttcattcatctgacaatacaggaa
tttttggctgcactcagaatcatgaccagcaatgatgttagtgacgcacagctcagaaag
agattcagtctgaaaactcgctggatgaccaagtcagaccagaggacagtctttactgac
tctttacacacatttgtatgtggtctggcttcccaacactgcactgcagccttacttcaa
atggccagggcttctggtggaacaggagtccaaacttgggtccagaaacgacaagctctt
gttctcaaactgctaaagaacctgtgccacagcaacacactgactgggcccaagatactg
gagctttgccactgtgtccaggagagccaggaccaccaactggccaaggaggttgtgggt
acgagacccaccctagagctgcgcaacatccgcctcttacccaatgatatagatgctctg
gcttttgtagttaactcagtgggtgataatggcatcggtttggactttggagcatgctca
atggagctggagtgtttagatgtcctgcctaggtgtcagtacattcactacctcagtttt
cggagccgcaagtatggcgacaagtttgctgagaagttgtcctccattttgcccgagttg
acaaccctgagaaaactagagttttgtggtgccagtctgacagccacaggagcagctagt
ttggcttctgctctagagaagtgtccagacatcaatgaaatcaatctcagtgacaacagt
ctgaaagacgaagggatgcaacacatagctgatatctttaccaaactaccgagactggcc
tctgtaatgttgagtcgaaacaacagctccctgaaagcagtggactatctcattgggaaa
atgtcctcatgtttgaacatccaacatcttcatgcagatgcaatgaaggaagtaatagta
aatttctcccaactctcagatatgagcagctataaaactaagtctgaaccaacaatcagc
ttgttgaaccagaaatggagcaagcctgagatgcaaaaagttgctaaatcattggcatgt
tgccccaccctatctgtcctggacatgtctggaggccagtggaatgtggaaattctgagg
acactgactcagtttttgccaaagttcagcgtcaccaacaagatcattctgaacgacagc
tgctcttcagtggagggtttggtggttctgactggtctgttgtctaactgtcctgctgtg
gtggagcttcatatcagtcttcagtcaagtccagaacctgttcaggtgtccatagtgttc
tctggagggagagaaaagcctgcaggtcaaacatctaaaacactctgtctcagctgctgt
ggtctgctgcacattgatctggagcgagtgtggaggagtctggggacgtcctgtgacctc
actgtgctggatttgtccagtaaccgtttaggcaacaaaggcctgaggaagttgttggat
gtcttgcctcatcttagcaacatccaggaaatcaatgccagtaacaatggcgtcagcatg
gagggagtggtgatgttggctggtactttgggctcgtctaacagcttaagagaaattcac
atcagtaatggaggcagagagcaggtgatcctgaagttctgctctgacaaaagcgatgac
aaacagcagctcaggatgttcaggttaaacaacagcatcctcctgccatctgatgtaacc
acattgtgtaggagattggtcgagtgtcgctcccatttggagttagatttgtctcacagc
tcattggaagatgaggccatcaagaatctgctcaaagtcctgccagagatggtgtcactg
cagagactcaatgtcggcaacagtatctcatccataactggagcactgattttggtcagc
tgtttgaccgtcagtcagcgagtcacatcagtagagctcaggcctcagagtgaaggcttc
atccattttgacagagtgaaaacagaacatgccagctgcaggttaactcattttagcctt
gactgcaacaacttggagagactgactgagattctggagcagggtcctccgctgtttgac
ctggatttatcaagtaaccaactgaaagatgaaggagtgaagtgtctcatggattctctg
ccaaggctaaaaatcaccagctttgtcaatctgagcaacaacagcctgacccagcagggg
ctgttgtatgtggccagcacactgtgcacctgtgataacatctctggtgtagaagtcagt
atgggagcagaggaaaggtgtcttatttggttcagacaccacagagacagtgaaaagact
ctgagtatcagagagagtagactggaacgtgaacatctggtcagattagcagagatctcg
tcaaactgtcccaatttgaccaaactggagttcaagaacaatttactgcattcggagtgg
atcgaagactttgtgaaagagttgaacattggtcagagaggatgcagtgtcagtattgag
gagtgttggatcagagctgaaaaagctattcatttagtgagtcgctgtctcgagctcagc
agcaacattcaaactatcaaggtggaccaaaccacactacacctgtctctgatgaaaccc
actgaacttatgtcagtcagccttgtggactgtgcactagaggggcaccagcttgcatct
atgtggaccatcatccagaggtgtccctcactgacagagctggatttttccatcaacagc
ctgggcatagagggggcggagtctcttagttctgttctgccatcgctgccaaatctcacc
tctctcagtattgtttctaaagagacatgtaaggctgtggctgagaagctgtctgaggcc
ttgctgcagtctacaactgttcagtgccttaatttatcaggtcatgtgataagtgacaca
gcagctcagactatgacaaggatgtttccccgtttacgatcactcaatctgtctcactgt
tcatggtcaccggctgaagggctgcagctcgtcacagcagcgctgagacagtgtgttagt
ttggaaggcctttgtctggactctgtgcacctggatgaaaacagcagggtgtgtctggca
caagcactgatgaatatccactcgatacgccgtctcaagctgaataagattggcacagtg
atggaaccaccagaagcaaacagtgtgttggatctcctccatgctatggagggactgaaa
caaatgcaggagatagagttgaagggctggaggttggctgatagagctgtagagcagatg
accagactgtttcctgtctggacagagctcaggaagatcagtctttcaaagacccttaat
ggcgaccaatcaggagacaagctactgggggctttgatcagctgtagtcatctggaggag
ctctatctgtgtggcaatggtcttggtgatctcactgctgccaggatggctcttgtccta
ccatcaatgacacacctgactgtgttagatatttcagagaacactattggatgtgaaggg
tcagtgagtctgtccaaagcaataatctgcatgaagaacctcaccaagattcaattgacc
tctgttgggacttcagagctgtgtgctgtagcttccagtctggctcattgccctctcata
caggatgtgggtctgggatggaataattgtggtgatgaagtggcgctggagctggccaga
gtgttgcctttctgtcagaagctgaacagaatagatctggaggccaacattgtgactgtt
tttggagtggatgccctggttagagccttacagtcatgccctgctgttcagctcatcaag
ctgtggaggaacaaagtgcatcccaatgaagcccacaggctgagtctgaaggacaggagg
ctgaatttctcatccacttaa
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