Lates calcarifer (barramundi perch): 108901992
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Entry
108901992 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1G
KO
K04854
voltage-dependent calcium channel T type alpha-1G
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108901992
04020 Calcium signaling pathway
108901992
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108901992
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108901992
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
DUF3043
Connexin
DUF4834
DUF7501
TRM10_TRM10A
Motif
Other DBs
NCBI-GeneID:
108901992
NCBI-ProteinID:
XP_050922225
LinkDB
All DBs
Position
LG23:complement(1704235..1839258)
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AA seq
2389 aa
AA seq
DB search
MLVILLNCVTLGMFHPCEDSNCDSERCRILQDFDDFIFAFFAIEMVIKMVALGIFGKKCY
LGDTWNRLDFFIVLAGMLEYSLNLQNVSFSAVRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFVDDNFSFPLSLKMPDYYHTENDDEN
PFICSQRRDNGMRDCSSVPKRYEEGGLQCNLDMSSYNSTDNTTCVNWNQYYTKCSAGQYN
PFKGAINFDNICYAWIAIFQVITLEGWVDIMYFVMDAHSFYNFIYFILLIIIGSFFMINL
CLVVIATQFSETKQRESQLMKEQRVRFMSNASTLASLSEPGSCYDELLKYLVHIIRKGAK
QVAHICRLLARRAGLNIAASPPASDPQRSQSQRRRRKSSRQGSVSVHHMVHHHHHHHHHY
HLGNGSVRGGGGIRCMEGRDLDIGAHNNNGGALVATGNLALAPSSSVTAATSDSNLATLS
SPTAGAADSASVRSIFNMETLRCTPSPTRMGPSPGSFSLAPVPMSRAMKRNSVPFVAPGP
KNYPTLQARALAESRRGSVAASTLTNINFNLNIPPMPLERRPSSLVDTHTPTAQLSCQLS
ARDLSTTSSAMDTAALTLDPESCPYCAKALANESEGGTEGNETPGDSDSEGVYEFTQDLH
HRDRRDSRQPKKKHRRLGKTAAKVVHFWRLVCDTFRKIVDSKYFGRGIMIAILINTLSMG
IEYHEQPDELTNALEISNIVFTSLFSLEMLLKVLVYGPFGYIKNPYNIFDGIIVVISVWE
IVGQQGGGLSVLRTFRLMRVLKLVRFMPALQRQLVVLMKTMDNVATFCMLLMLFIFIFSI
LGMHLFGCKFGSERDEDTLPDRKNFDSLLWAIVTVFQILTQEDWNKVLYNGMASTSPVAA
LYFIALMTFGNYVLFNLLVAILVEGFQAEEVSKREDLHAQLSLIQLPVDSGGDASKSGSE
IDSFARSMEDVNGSKKDLSASAVVPVNGHVDLKTSLTPPLITHTAATPMPVPKLPVGGDP
ILGYESRRGSNVSIDPACYDKSPTSARSSSPYAPWSSGSGWTSRRSSYNSQGRAPSLKRQ
KRQSGERRSLLSGEGGSSSEEGEGGGEGGGLMEDDDTSLARTDSMSQSQRGPRHRRMESV
ETRSSMDLPPDALLQVPYLYRSASMHSSRPPSLGHLRPTEHSDCNGKGSLSVLGPTHVSL
EDNTEDENAEEEPSLGRFARLFRWLEKKQPEWCRQRDTWSLYLFPPDSRFRILCNKIITH
KMFDHIVLVIIFLNCITIAMERPRIDPTSAERLFLTLSNYIFTAIFVAEMTVKIVALGWC
FGDKAYLRSSWNILDGMLVMISVIDILVSLISNSGTKILGMLRVLRLLRTLRPLRVISRA
PGLKLVVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGKFFKCQGENVTHINNKSDC
LQANYKWVRHKYNFDNLGQALMSLFVLASKDGWVDIMYDGLDAVGVDQQPVMNYNPWMLL
YFISFLLIVAFFVLNMFVGVVVENFHKCRRHQEAEEAKRREEKKRKRKEKKRRSKEKELA
EAQSKPYYSDYSPTRLLIHKMCTSHYLDLFITIVIGLNVITMSMEHYQQPKELDEALKIC
NYIFTLIFVLESVFKLVAFGFRRFFKDKWNQLDLAIVLLSIMGITLEEIEVNASLPINPT
IIRIMRVLRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFG
DLICDELHPCEGLGRYATFKNFGMAFLLLFRVSTGDNWNGIMKDTLRDCAHDTSSTCYNT
VVSPIYFVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEAEMEMEAQELELELQMDGGDM
ATRSPQLNPLALGMDRSSSGGSPWRSTGGGDREQERDGPMDSPTADITRDSVNIRADAPS
CLDPPLEPEQLDPGEPLGDNLLSVRKPTVGRTHSLPNDSYMFFPLQPFGPTAPAPAQLLA
QTQGPQHILGTHRSQSGSSASVRSQPEEFSQQLTIPTDLLRPISPHSHSDSESIPQLPLP
RRTHTLSRTLRRQVAVSTDSQEALCSDGGESSEGLVNVASLGLPPSPSSTPSPTPPSPCS
HHHQQPALCLVPATPGASPKPSRPGSVHTQHHDQHCLASYFPSSSSSSSSCSPSSPPPPL
PARPHQQEEASVDQEVSLITCVGLAGSDDVMAEDSGDFNEGYSSYAGCQESRSPYLRQLK
RFHSADTQGRSTLLPRPRPSSWLDDPRRHSVEVCPSVESSPQRSTTSTSSGFVSQADSLQ
IHTQTSLPSPRRKKKMSPPCISVDPPDGLEPQSGLYPGLGGLGGLGMPPPLPSRDTCLRR
RAPSSDSKDSFDLGVGEGSGQDGGSPNPNTNPKLLTLPSFSFEKTSSEH
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgatcctgctgaactgtgtgacactgggcatgtttcatccctgcgaggacagc
aactgtgactctgagaggtgcaggatcctgcaggattttgacgacttcatctttgcgttc
tttgccattgagatggtgatcaagatggtggctctggggatttttggcaagaagtgttac
cttggagacacgtggaaccgcttggacttcttcatagtattggctgggatgttggagtac
tccctcaacctgcagaatgtcagtttttcagcggtgaggacggttcgcgtgctgagacca
ctgagagccatcaaccgagtgccaagtatgcgtatcctggtgaccctgctgctggacacc
ctgcccatgctgggcaacgtgctgctgctctgcttctttgtcttcttcatatttggcata
gtgggcgtccagctgtgggccggcctgctcagaaaccgctgcttcgtggacgacaacttc
tccttccctctgtctctgaagatgcctgactactaccacactgaaaacgatgatgagaac
cccttcatctgctctcagcgtcgagacaacggcatgagagactgcagctcagtgcccaag
cggtacgaggagggaggcctgcagtgcaacctggacatgtcctcttataacagtactgac
aacaccacttgtgtcaactggaaccagtactacaccaagtgctctgctggtcagtataac
cctttcaagggagccatcaactttgacaacatctgctacgcctggattgctatctttcag
gtgatcactctggagggctgggtggatatcatgtactttgtgatggatgctcactccttc
tacaacttcatctacttcatcctactcatcattattggctcattcttcatgatcaatctg
tgcctggtggtcatcgccactcagttctcagagaccaagcagagggagagccagctgatg
aaggagcagcgggtgcgcttcatgtccaacgccagcactctggcctccctctccgagccg
ggctcctgctacgatgagctcctcaagtatctggttcacatcatccgcaagggagccaaa
caagtggcccacatctgcaggctcttggctcgccgcgccgggctcaacatcgccgcctcg
cccccggcctcggacccccagcgtagccagagtcagaggaggaggaggaagtcctccagg
cagggatctgtgtctgttcatcacatggtgcaccatcatcatcaccaccaccaccactac
cacctgggaaatggcagtgtgaggggaggagggggcatccggtgtatggagggtagggat
ctggacatcggagctcataataacaacggaggggctcttgtagcaactgggaatcttgct
ttggcgccgtcctcctctgtcaccgcagcaacctctgattcaaacctcgccactttatcc
agtcctactgcaggagctgccgattcagcttcagttcgcagcatattcaacatggaaact
cttcgctgtaccccttcgcccacacgcatggggccatctccaggctccttctccctggcc
ccagttcccatgtccagggccatgaagaggaactcagtcccctttgttgctccgggtcct
aaaaactatcccaccctgcaggcccgagccctagcagagtccagacgaggaagtgttgca
gccagcactctgactaacatcaacttcaacctcaatatcccacccatgcccctggagaga
cggccatcgagcctggtggacacacacactcccacagcccagctctcctgccagctgtca
gcgcgtgacctcagcaccaccagcagcgccatggacacggctgctttgaccctggaccct
gagagctgcccctactgcgccaaggccctggccaatgaatcagagggtggcacagagggc
aacgagacgcccggtgattcagacagcgagggtgtgtacgagttcacccaggacctccac
cacagagacaggagagacagccggcagcccaaaaagaagcaccgcaggctgggcaagaca
gcagcgaaggttgtccacttctggaggctggtgtgtgacacgttcaggaagatcgtggac
agcaagtactttggacgagggattatgatcgccatcctgatcaatacgctgagcatgggg
atcgagtaccatgagcagcctgatgagctgaccaatgcgttggagatcagtaacattgtg
ttcaccagcctcttctccctggagatgctgttgaaggttttggtctatgggccctttggc
tacatcaagaacccttacaacatctttgatggcatcatcgtggtcatcagtgtgtgggag
atcgtgggtcagcagggtggcggtctgtctgtgctgaggaccttccggctgatgcgggtg
ctgaagctggtgcgtttcatgccggccctgcagaggcagctggtggtgctgatgaagacc
atggacaacgtggccaccttctgcatgctgctcatgctctttatcttcatcttcagtatc
ctggggatgcatctgtttggttgtaaatttgggtcggagagggatgaagacactctgcca
gacaggaagaactttgactctcttctctgggccatagtgactgtcttccagatcctgacc
caggaggactggaacaaggtgttatataatggcatggcctccacctctcctgtagcagcc
ctctacttcatcgcactcatgacctttggaaactatgttctcttcaacttgctggtggcc
atcttggttgagggtttccaggcggaggaagtgtccaagcgggaggacttgcatgcccag
ctgagcctaattcagctgcctgtagactcagggggtgatgcttctaaatcgggttcggag
atcgattcctttgcacgaagtatggaggatgtcaacggcagcaaaaaggatttatcggcc
tctgcagtagttcctgtaaatggtcatgtggacctgaagaccagcctgactccacctctg
attacccacacggctgccacccccatgcctgtacccaagctgcccgttggaggtgacccc
atcctgggctatgagtcccgtcgaggcagcaacgtctccatagacccagcctgctatgac
aaatcaccgaccagtgcccggagctcttctccctatgccccgtggagctctggaagcggc
tggaccagccggcgatccagctacaacagccagggtcgcgccccatcgctcaaacgccag
aagcggcagtccggggagcggcgctcgctcctctctggggagggcggctccagctcggaa
gaaggggagggtggaggggaaggaggtgggttgatggaggatgatgacacctctctggcc
aggacggactccatgtcgcagtcacagagaggtccccgacatcggaggatggagtcagtg
gagactcggagctccatggatttgccacctgatgctctgctacaggtaccctacctgtac
cgctcagccagtatgcacagctccagacccccctctctgggccacttgcggcccacagag
cacagcgactgcaatggaaaaggctctctatcagttttggggccaacacacgtctcatta
gaagacaacaccgaagatgaaaatgcagaggaggagcccagcctgggtcgttttgcaaga
ttgttccgctggctggagaagaagcagccagagtggtgtcgacagagagacacctggtca
ctctacctcttccctccagactccaggtttcggatcctgtgtaataagatcatcacccac
aagatgtttgaccacattgtgctggtcatcatcttcctcaactgcatcactatcgccatg
gagaggcctcgcatcgaccccaccagcgctgagcggctcttcctcacattgtccaactac
atcttcacagcgatcttcgtggctgagatgactgtaaagatcgtagctctgggctggtgt
ttcggggacaaggcctatctgaggagcagctggaacatcctggatgggatgttggtgatg
atttctgttattgacatcctggtgtcgctcatctccaactcgggcaccaagattctgggc
atgctcagagtgctgaggctgctgaggaccctgaggccgctacgtgtgatcagcagagcc
ccggggctgaagctggtggtggagaccctgatgtcatcactgaagcccatcggcaacatt
gtggtcatctgctgcgccttcttcattatctttggcatcctgggagtacagctcttcaag
gggaagttcttcaaatgtcaaggagagaatgtcacgcatatcaacaacaagtcagactgc
ttacaggccaactacaaatgggtcagacacaagtacaactttgacaacctgggacaggcc
ttgatgtctctttttgtcctggcgtcaaaagacggctgggtggacattatgtatgacgga
ctggatgctgtaggagtcgaccaacagccagtaatgaactacaacccatggatgctgctg
tacttcatctctttcctgctgattgtggccttcttcgtgctcaacatgttcgtgggcgtg
gtggtggagaacttccacaagtgccggcgccaccaggaggccgaggaggccaagcgcagg
gaggagaagaagcggaaacgcaaggagaaaaagagacggagtaaggagaaggagctggct
gaagctcagagtaagccctactactccgattactcccccacccgtctgctcatccacaag
atgtgcactagccactacctggacctgttcatcaccatcgtcatagggctcaatgtcatc
accatgtccatggagcactaccagcagcccaaggagttggatgaggcactgaagatctgt
aactacatcttcaccctcatctttgttctggagtccgtcttcaagctggtggccttcggt
tttcgacgattcttcaaggacaagtggaaccagctggatctggccatcgtgctgctgtct
atcatgggcatcactctggaggagattgaggtcaacgcttcactgcccatcaaccccacc
attatccgcatcatgagagtgctgagaatcgcacgagtattgaagctcttgaagatggca
gtggggatgagagctttactggacaccgttatgcaagccctgcctcaggtggggaatctg
ggtcttctcttcatgcttctcttctttatctttgcagcgctgggagtggagctgtttggt
gacttgatttgtgatgagctccacccatgcgagggtttggggcgctatgccacatttaaa
aactttgggatggcatttctgctgcttttcagagtttccactggagacaactggaatggc
ataatgaaggacacattaagagactgcgcccatgacaccagcagcacctgctacaacacc
gtggtctctcccatctacttcgtctccttcgtcttgactgcccagtttgtcctggtcaat
gttgtcatcgcagtcctgatgaagcatctggaggagagcaacaaggaggccaaggaggca
gagatggagatggaggctcaagagttggaactggagctccagatggacggtggagacatg
gcaacgagatcgccccagctaaaccctctggcactgggcatggacaggtcaagttctggt
gggtcaccttggaggtccactggaggaggggacagggagcaagaaagggatggtcctatg
gactcgcccactgctgacataaccagagactctgtaaacatcagagcagatgccccttca
tgcctggaccccccactggagccggagcagctcgatcccggggagccactgggggacaac
ctgctgagcgtcaggaaacccacagtgggacgcacacactccctgcccaacgacagctac
atgttcttccccctgcagccctttggccccacagccccagctccagcacagcttctagca
cagacacaggggccccagcacatactgggtactcataggtcccaatcaggctccagtgcc
tcggtgcgttcacaaccggaggagttttcccagcagctgaccattcccacagacctcctc
agacccatcagcccccacagccactcagactcggagagtataccacaactaccccttccc
agacgcacacacacactaagccgcacgctccgcagacaggttgcagtgtctactgattct
caggaggccctgtgttcagacggaggggagagcagtgaaggacttgtgaatgtggcctct
ctgggtctccctccatctccctcctccaccccctccccaacccctccctcaccctgctcc
catcatcatcagcagcctgctctctgcctggtccccgccactccaggtgcctcccctaag
ccctcgcgccctggcagcgtgcacacccagcaccacgaccagcactgtctcgcctcctac
ttcccttcctcctcctcctcctcctcctcctgctcaccctcctcacctcccccaccctta
ccagccaggccacaccaacaggaggaggcctcagtggatcaggaagtgtccctcattacc
tgtgtgggattggctggcagtgatgatgtcatggcagaggacagtggggattttaatgag
ggttacagctcctacgcaggctgccaggagagtcggagtccgtatctgaggcagctgaag
aggttccacagtgctgacacccagggccgcagcaccctcctgccccgcccccgtccttcc
tcctggttggacgaccctcgacgccactctgtagaagtatgcccctcggtggagtccagc
ccccagcgcagcaccacctccacctcctccggttttgtgtcgcaggccgacagcctgcag
atccacactcagacctcgctgccctcacctcgacgcaagaagaagatgagcccgccctgc
atctctgtagacccccctgacggactggagcctcagtctggcctctacccgggcctgggt
gggcttggggggttaggcatgccccctcctctgcccagccgggacacctgcctgaggagg
agagcgccctccagtgactccaaggactcctttgacctgggagttggagagggttcggga
caggacggaggctcgccaaaccccaacaccaaccccaagctattgactcttcccagtttc
tcctttgagaagacaagctctgagcactga
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