Lates calcarifer (barramundi perch): 108902040
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Entry
108902040 CDS
T04895
Name
(RefSeq) transcription factor IIIB 90 kDa subunit-like isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108902040
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
108902040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
Zn_Ribbon_TF
Cyclin_N
BRF2-like_C_cyclin_rpt
A2L_zn_ribbon
Zn_ribbon_tTFIIB
Motif
Other DBs
NCBI-GeneID:
108902040
NCBI-ProteinID:
XP_050933990
UniProt:
A0AAJ8BLD7
LinkDB
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Position
LG19:22547546..22670789
Genome browser
AA seq
690 aa
AA seq
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MSSKVCKNCGSSDIDVDQARGDAVCMGCGSVLEDNIIVSEVEFVETGGGGSLAVGQFVSA
EAGAKHPSFGDVHFTGRESRAQTLQKAKQHINTLGHQLQMNQHCLDTAFNFYKMALTKHL
TRGRKASHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGRTFLVLARELCINAPAID
PCLYIPRFAQLLEFGEKNHDVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHDF
RRTIKEIVSVVKVCETTLRKRLIEFEDTPTSQLTIEEFMKMDLDQECDPPCYTAGLKKQK
ARQLEMELKKKMEDVEEEIHGYEDEIDAELQSSRPKLRGVYAAYAKEDCENDDDDILSTS
SKVADDEEPEDEDELQAVAKHFGKDIEELTLEALIKLEQRRTEEEEEEEEQEEDVPKRKG
PSLESILGTMPSAATLGLSESLNSCMGEEKENDGAADSGELDLSGIDDSEIELYLLDDKE
IKIKTALWMAENSDYLKEQREKEAKIAKEKELGIYKEKKPKGPAKRRPPIRASTADEAIG
KMLEQKKISSKINYDVLKDLNIKPGASPARKAESPKKEPSVTRLTGRNRTPARTPLSLST
PLSTLGKRLQPFIAGQPNKKLAVEQVANSNPLPLPVGAPASGVVVESGPVMYDDAAADEE
EEDEEETCVSAMELMGSNDYGCDGDYDDGF
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgagctccaaggtgtgtaagaactgcggcagctcggacatcgatgtggaccaggcgcgt
ggtgatgcggtctgtatgggctgcggctccgtgctggaggacaacatcatcgtgtccgag
gtggagttcgtagagacgggaggcggagggtcgctggctgtcgggcaattcgtctctgca
gaagctggagctaaacatccctcctttggagatgtgcacttcacagggagggagtcccga
gctcagacgctgcagaaagccaaacagcacatcaacactctgggccaccagctgcagatg
aaccagcactgtctggacacggccttcaatttctacaagatggcgctgacaaaacacctg
acccgcggccgcaaggcgtcgcacgtcatcgccgcctgtctctacctggtctgccgcacc
gagggaacgccacacatgctgctggatctcagtgacctcctgcaggtgaacgtctacatc
ttgggaagaacttttcttgtcctggccagagaactgtgcatcaatgccccggctatagac
ccgtgcctgtatattccccgtttcgcccagctgctggagttcggcgaaaagaaccacgac
gtctccatgacggcgctgaggctggtgcagaggatgaagagggactggatgcacacggga
cgaaggccgtcgggactctgcggagcagctcttctcgtcgccgctcgtatgcacgacttt
cgccgcaccatcaaagaaatcgtcagcgtcgtgaaagtgtgtgagaccacgctcagaaaa
agactcatagagtttgaggacacgcccaccagtcagctgaccatcgaggagttcatgaag
atggatctggaccaggagtgcgacccgccttgctatacagctggactgaagaagcaaaaa
gcccgtcagctggagatggagctgaagaaaaagatggaggacgttgaagaagaaattcat
ggctacgaggatgaaatcgatgcagagcttcagagcagcagacccaaactgagaggagtc
tacgctgcttacgctaaagaagactgtgaaaatgacgacgacgacatcctctccacgtcg
tccaaagtggcagatgatgaggaaccagaagacgaggatgagcttcaggctgtggccaag
cacttcggcaaagacatcgaagagctcacgctggaggccctgataaaactggagcagagg
agaacagaggaggaagaggaggaagaggagcaggaggaggacgttccaaagcgaaagggc
ccgtcgctggagtccatcctgggtacgatgccgtcggcagccactctgggcctctccgag
tccctcaacagctgcatgggagaggagaaggagaacgatggtgctgctgacagcggggag
ctggacctgagcgggatagatgacagcgagatagagctgtatctgctggatgacaaagaa
atcaaaatcaagacggcgctctggatggcagaaaactcagactacctcaaagagcagaga
gaaaaggaggcgaagatagcgaaagagaaggagctcgggatctacaaagaaaagaagcct
aaaggtcctgcgaagaggcgtcccccgatccgagccagcaccgccgacgaggccatcggg
aagatgctggagcagaagaagatctcctccaagatcaactacgacgtcctgaaggacctc
aacatcaaacccggcgccagcccggcccgcaaagccgagtccccaaagaaggagccgtct
gtgaccaggctgacgggacgcaaccgcacgcctgcacgaacgccgctgagcctcagcacg
ccgctcagcaccctgggaaaaaggttgcagccgttcatcgccggacagcccaacaagaag
ctggccgtggagcaggttgccaactccaaccccctgccgctgcctgtgggagcccccgcc
agcggagtggtggtggagagcgggccggtgatgtacgatgacgcagctgctgatgaggaa
gaggaggatgaggaggagacctgtgtcagcgccatggagctgatgggcagcaacgattac
ggctgtgatggagattacgatgatggattctag
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