Lates calcarifer (barramundi perch): 108902076
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Entry
108902076 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04382
Cornified envelope formation
lcf04510
Focal adhesion
lcf04512
ECM-receptor interaction
lcf04518
Integrin signaling
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108902076
04518 Integrin signaling
108902076
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108902076
09142 Cell motility
04820 Cytoskeleton in muscle cells
108902076
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108902076
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108902076
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108902076
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108902076
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108902076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108902076
NCBI-ProteinID:
XP_050931534
UniProt:
A0AAJ8BGM1
LinkDB
All DBs
Position
LG14:12665879..12779588
Genome browser
AA seq
1699 aa
AA seq
DB search
MKFLICVVAVALAVRSAHGGTKFDEPCAGQDCSGGCKCNPEKGSRGRPGLLGEVGPSGPE
GPRGGLGPSGPKGEKGHIGVKGPSGPKGDKGPMGVPGFQGTDGVPGHPGQEGGRGPPGLD
GCNGTRGDPGPPGYGTGAPGFPGSPGPTGPKGQKGEPRYISDNGITSYPGVPGPDGQPGI
RGPDGPSGLPGPAGPEGFPGPPGPPGPPGLMGSRSDGYQGEKGDKGDVGLPGDPGQPMIN
GVVEFVGFPKGDKGMQGEPGPKGVRGFPGNPGPPGPFGYRGEYGEKGIPGYPGARGPPGF
NGPPGNPGQQGFRGNPGFPGQPGYIGPKGDQGEPGLPGPPAYTSGNGPTVQGVTGDPGQS
GLPGAPGDQGPPGFPGTPGPPGSVLDPIFGGRPGTPGFPGTPGPKGEKGNPGAPSYGIEG
IPGSPGLPGPIGPPGPPGPSSLAVDPCVIYPVSPKGSPTDQTTSYPGEPGQPGPRGAPGN
TGYKGIRGDPGDCACLGGGTPGLPGLPGSPGATGSSGFPGRKGEQGDPGSPGFNGIQGPP
GRPGETGFYGRKGEKGASYYPNLGLGVKGELGAPGPRGPTGETGKPGRDGLPGFPGTPGP
PGDAGFGTVGEKGFPGYPGGKGRPGGPGEPGIGYVGTPGFRGLPGEPGIPGLPGQPGLPG
PRGQVLPCTIPGEAGDPGYPGVPGRPGLKGEPGFPGSPGRPGLDGSKGERGDPGFGGQPG
PQGFPGPRGEPGVPGIPGQSFDGARGKDGVPGLPGAKGQPGEVLGATPGAPGRNGLPGLP
GDKGQPGTPGGPGLPGTDGRSGAPGLKGERGVDGLPGFPGPPGPPGEPTGGIPGRPGPPG
NKGLSGSPGFPGRKGDRGDPGFPGPAGMKGTPGLPGTPGLPGPRGPPGPPGPGTREGIPG
IPGTKGERGFPGLMGFPGQPGRPGAPGFPGGKGLPGGPGRDGRPGGPGYPGQKGERGYPG
LPGLPATPGPQQFVEKGDPGYPGGSGLPGFPGPRGDKGLPGLPGRQGLPGLPGFAEQSKG
QPGQPGYPGQPGLPGFPGPKGEAGIMGFPGMSGARGDDGAPGFPGNPGEAGRPGGKGVPG
DSYGYPGAPGNKGLPGDSGYPGGRGNDGAPGDNGFSGSPGFPGAKGAPGEPGRPGITGSP
GFPGPKGLQGFPGRRGSDGSPGLPGGSGGPGSKGLPGSPGLDGLNGLAGPKGIPGTPGAS
GGGLPGAPGIPGLKGERGVSYPGSPGFPGGKGERGESGGPGLPGFPGLPGLPGQSVGSDV
PGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDSGLPGFPGSPGRKGEAGIPGG
PGGPGVPGAKGARGETGFSGGPGLKGFSGDPGFYGNKGAKGFRGLPGRKGFPGVTLPVQP
SDFTRPFGDIGFPGEFGTSGAPGESGQPGTPGRPGPKGRPGSVGKLGRTGAPGLPGPVGD
PGPPGFPGPTGEQGLPGAAGRPGIPGGVGRSYSIGYTLVKHSQNSQTPMCPQGMAKLWDG
YSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDKSYWLSTTAPIP
MMPVAEEQIRPYISRCSVCEAPSQAVAVHSQDTNIPNCPPGWRSLWIGYSFLMHTAAGAE
GGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDLNQEFVYSPNQETL
KGGQERSKVSRCQVCSKIL
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgatttgtgtggtagcggtcgccttggccgtgagatctgcgcacggaggt
accaagtttgacgagccgtgtgcaggccaggactgtagcggaggatgtaagtgcaaccca
gagaaaggcagcaggggtcgtcctgggcttctcggagaagtcggcccaagtggaccagag
gggccacgtggcggcctggggccttcaggacctaaaggagagaagggccacattggagtg
aaaggaccatctggccccaaaggagacaaagggcctatgggagtgccggggttccaggga
accgatggagtacctggtcaccctggtcaggagggtggcagaggaccaccaggactggac
ggctgtaacgggaccagaggagaccctggaccacctggctatgggacaggagcacctgga
ttccctggatcccctgggccaactgggccaaagggtcaaaaaggagagccccgatacatt
tcagataatggcatcacgagttatccaggtgtaccaggaccggatggtcaacctggtatc
agaggacctgatggtccatctggtttgcctggtccagcagggcctgaaggattccccggc
ccacccggtcctcccggtccaccagggctgatggggagccgtagtgacggatatcaagga
gagaaaggagacaagggcgacgtgggcttgcccggtgaccccggccagccaatgatcaat
ggcgttgtggagtttgtgggttttcccaaaggagacaaaggaatgcagggagaacctggc
ccaaagggagtcagaggattccccggcaatcccggaccacctggacctttcggctatcgt
ggtgaatatggagaaaagggcattcctggataccccggagcaagaggtcctccaggtttt
aacggcccccctggcaatccaggacaacagggattcagaggtaatccaggtttccccggg
caaccaggatacataggacccaagggagaccagggagaacctggactaccaggacctcct
gcttacaccagtggcaacggccccactgttcaaggagtaacaggtgatccaggtcagagt
ggcctgcctggtgctccaggagaccagggacctccagggttcccaggaacaccaggccca
ccaggatcagtgttggatcccatctttggaggtcgcccaggcaccccaggttttcccggc
accccaggcccaaagggagagaagggtaacccgggagcgccaagctacggcatcgaagga
atcccaggatcccctggactccccggacccattggcccccctggacctccaggcccttct
agcttggccgttgatccctgcgtcatctaccctgtcagtcccaaaggttctcccactgat
caaaccaccagctaccccggagagccggggcagcccggtcccagaggagcaccgggtaac
acaggatacaaaggcatcagaggtgatcctggtgactgtgcctgcctgggaggaggcacc
ccagggttgcctgggctacccggatcccccggagccaccggcagctccggcttccctgga
cgaaagggtgaacaaggtgatcccggttcacctggctttaatggaattcagggacctcct
ggtcgtcctggtgaaacaggtttttatggtcgcaagggagagaagggggcatcttattac
cccaacctgggtttgggggtgaaaggtgagctcggagctcccgggcccagaggacctaca
ggtgaaactggaaaacctggcagagatggactgcctggcttccctggaacccctggtccc
ccaggtgacgctggcttcggcacagttggagagaaaggtttcccagggtatccagggggt
aagggtcgtcccggcggccctggcgagcccggcatcgggtatgttggaacccctggcttt
cgcggactgcccggagagcctggtatacctgggttgccagggcaaccaggtttacccgga
ccgagaggccaagtgctaccttgcaccatacctggtgaggctggagaccccggttacccc
ggtgtacctggacgaccaggccttaaaggtgagccaggttttccaggaagccctggacgt
ccagggttggatggctcaaaaggagaaagaggagaccctggttttggaggtcaacctgga
ccacaaggtttccccggtcccagaggagagcctggagttccaggtatcccaggacagagt
tttgatggagccagggggaaggatggtgttccagggcttcctggagccaaaggccagcct
ggagaggtactgggagccacacctggtgctccaggacggaacggtttaccgggacttcct
ggagacaagggtcagcctgggacaccaggaggacctggattgcctggtactgatggacgt
tccggcgctcctggactaaagggagagcgcggagttgacggtcttcctggtttccctggc
cctcctggacctccaggtgagccgaccggtggcattcccggtcggcctggacctcccggc
aacaagggactgagtggatcaccaggtttccccggtcgtaagggagacagaggagaccca
ggattccctgggcctgctggcatgaagggaaccccaggactgcccggcaccccaggatta
ccagggccaagggggcctcccggacctccaggaccgggaactagagagggaatcccagga
ataccaggaacgaagggtgagagaggtttcccggggctgatgggtttccctggacaacca
gggcgtcctggtgctccaggattccctggaggaaaaggactgcctggtgggcctggaaga
gacggacgtcctggtgggcccggataccccggacagaaaggtgagagaggataccctggt
cttcccggcttgcccgctacccctggtccacaacaatttgtggagaaaggagaccccgga
tatcctggaggcagcggcctccccggcttccctggacccagaggtgacaagggtctgcca
ggcctgcccggtcgtcagggtctgcctggacttcctggttttgctgagcagagtaaagga
cagccgggacagcctgggtacccagggcagcctggacttccgggctttcccggaccgaag
ggagaggctggaatcatgggattccccggcatgtctggagcgaggggcgatgacggcgca
cctggtttccctggtaatcctggagaagctggtcgacctggtggcaaaggtgtacctgga
gattcttatggttatcctggagctccagggaataaaggcctgccgggagattcaggctac
ccaggtggtcgtgggaatgatggcgcccccggtgacaacggcttttcaggaagtccaggt
tttcccggagcaaagggagctcctggtgaaccaggacgacccgggataacgggctcccct
ggtttccctgggccaaagggtctgcagggcttcccaggaagaagaggatcagatgggtct
cccggtctgcctggaggttctggaggacctggctctaagggtttgcctggatcccctggt
ttagatggactcaatggccttgctggacctaaaggaatccctggaactccaggagccagt
ggaggaggtctcccaggtgcccctggtattccagggttgaagggagagagaggcgtctcc
tacccaggatctccaggcttccccggagggaagggggagagaggagagtcaggcggtcct
ggactcccagggtttcctggtctgcccggacttcctggtcagagtgtggggtcagatgtt
cctggacctgtgggagaccctggcctccctggactggatggagagtatggtttccaaggt
cctccaggtccaccggggcctcctggtccaggcacagcgcagggagaccgaggtgattcc
gggctcccgggcttccctggctcccccggcaggaaaggtgaagcaggaatccccggaggt
cccggaggccccggcgtgcccggcgccaaaggagcacgaggtgagactggcttcagcgga
ggtcctggtctgaagggtttctccggtgaccctggtttctatggaaacaaaggagccaag
ggattccgagggttgcctggtcgtaagggtttccctggagtcaccctgccagtacaacca
tcagacttcacacgacccttcggagacattggttttcccggtgaattcggaacctctggt
gcccctggagaatccggtcagcctggaacccccggacgtccgggtcctaaaggtcgtcct
gggtctgtgggcaaattgggcaggactggagctcctggtctgcctggacctgtcggtgac
cccggacctcctggtttccctggacccaccggagaacaaggtcttcccggtgcagccggt
cgtcccggcattcccggcggtgtcggccgcagttacagcatcggctacactctggtgaag
cacagccagaactcccagactcccatgtgtcctcagggcatggccaagctgtgggacgga
tacagcctgctgtacgtggaggggcaggagaaggcacacaaccaggacctcggtcagcca
gggtcatgcctcccgaggttcagcaccatccccttcctctactgttcccccaacgaggtc
tgctactacgccagccgcaatgacaaatcctactggctctccacaaccgcacccataccc
atgatgcctgtggccgaggagcagatacgaccttatatcagcaggtgttcagtttgtgag
gctccatctcaagctgtggcagtccacagtcaggacacgaatatccccaactgtccaccc
ggctggaggagtctctggataggatactccttcctgatgcacacggccgccggcgcagag
ggtggcggtcagtccctggtgtctccgggctcctgcctggaggatttccgtgcgacgccg
ttcatcgagtgcaacggagccaagggcacctgccactactttgccaacaagtacagcttc
tggctcaccaccgtggatctcaaccaggagttcgtctattcgccgaaccaggagaccctg
aagggaggccaggagcgctccaaagtcagccgctgccaagtctgcagcaagatcttgtag
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integrated database retrieval system
