Lates calcarifer (barramundi perch): 108902160
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Entry
108902160 CDS
T04895
Symbol
gigyf1a
Name
(RefSeq) GRB10-interacting GYF protein 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108902160 (gigyf1a)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108902160 (gigyf1a)
Surveillance factors
Other surveillance factors
108902160 (gigyf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GYF
GYF_2
Motif
Other DBs
NCBI-GeneID:
108902160
NCBI-ProteinID:
XP_018559417
UniProt:
A0AAJ7VL41
LinkDB
All DBs
Position
LG14:5020531..5044166
Genome browser
AA seq
1091 aa
AA seq
DB search
MTAETLNFGPEWLRALSSGGSVTSPPPSPAMPKYKLAEYRYGREEMLALYIKDNKVPEDM
QDKEFAAILQDEPMQPLALVPLTEEEQRNFSMSVNSVAVLRLMGKGVGGAAPAGVVRGRG
ATRGGRGRGRGEGGFYQRSIEDVEVGFGRSVREIHRSQSWDDRGERRFEKPLRREVGRPG
FEEAGGPGGPGRKEYTRADSDNWRTLREEQEEDEGEPGSNWRLAGPRRDDGGPRSAGWRD
HSGPGESRRRKFDFDFRDSEGHGGGRRRAGSEGLEDDRDGLPEWCTDEEDSEMGTFDSSG
AFMPMKKGGKETILEEEFEFKGIEEEEEESLADNERNSAEGDKDKESKEASSAVVDGEAK
PASPSSSPPTHCTPPSLEPQPSNAGPVVENTQLSNSQVKANSTPGEDVAPVGGSKAQLSP
SAATSSSLPPPPPSSAAPLLPPSGGDTEDDEGMKHLQQEAEKMVASLQDTSLEEECFTQA
LQQQQESRNTAAALPLSHEAAMKWFYKDPQGEIQGPFTTVEMCEWFQAGYFTMTLLVKRG
CDEGFQPLGDVIKMWGRVPFAPGPSPPPLLVRQPPPTQRPQPTRGPAGTVSQSSANVEDG
EGRMQRRGNIDRQVMGNLDQERLKKQQELAAAALYQQLQQQQLFQLINRCSEQGIMPSMN
RSMSVPDTGSMWDMHTSASQPSGGEASLWDITMNPSTQGPTLEQLQKLQQERRDAELRAK
REEEEQRKRREEKRRQQEEQKRREEEELFRRKQCRQQQELIMKLLQQAPQQQGPGAGGSG
WSGGPSTGLTKAGKSPALALMEMQQEAERLLKQQQQQRAQQQRDRHPGMSMGSSSMGGQW
VEGVGMWGGPGGMEGKSGSGSSSGSMGMWDEAVKNQTGLRGNSNNNMGLKNSRSSPSLSD
QYMMRRKRTEEEEKLLKLLQGMKPQDGFTTWCEQMLHALNTSANNSSSSLDVATIVAYLK
EVESPYAVLDFIRSYLGDTVEAKEFAKQFLERRAKQKANQQRQQQQLSKEVAGLNMNFPL
QDSMRGMNPSTLQSMFQANHMGKAGLYDNQGGKMKKKQPMMLHSDPSILGYSFHNTGECL
SLNEMEMVEDY
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgagactcttaacttcggcccagaatggctccgtgcactgtccagtgggggg
agtgtgacgtccccccctccttcccccgccatgccaaagtacaagctggccgagtaccgc
tacggccgagaggagatgttagcactttatatcaaagacaacaaggtcccagaggacatg
caggataaggagtttgctgctattctgcaagatgagcccatgcagccactggcactggtg
cctctcactgaggaggagcagaggaacttctccatgtctgtgaacagtgtggcggtgctg
aggctcatgggaaaaggggtgggtggggctgccccagctggagtggtccgaggacgaggg
gccacacgaggtggtcgaggacgaggtcgtggtgaaggtggattctaccaaagaagtatt
gaagatgtggaagtgggttttggccgcagcgtccgagagatacaccgcagccagagctgg
gatgaccggggtgagcgccgatttgagaagccgctgcggcgcgaggtggggcgtcctggc
ttcgaagaggctggaggtcccgggggtccagggaggaaggagtatacaagggctgacagc
gataactggcgcaccctccgggaagagcaggaggaggatgagggggagccgggcagcaac
tggagacttgctggaccccgcagggatgatggtggtcctcgctcagcaggctggcgggac
cacagcggtccaggtgagagtcgccggaggaagtttgattttgacttccgggactcggag
ggccatggtggtggccgccggcgtgcaggcagtgagggactagaggatgacagggacggc
ctgcctgagtggtgtacagatgaggaggatagtgagatgggcacgttcgactcttctgga
gctttcatgcctatgaagaagggtggcaaggagacaatcctggaggaggagtttgagttt
aaggggatagaggaggaagaggaggagagccttgctgataacgagaggaacagtgctgag
ggagacaaggacaaagagagtaaagaagccagctctgctgtagttgatggtgaggcaaag
ccagcatcaccttcctcttctcctccaacacactgtacccctccatccctggagccccaa
cccagcaatgcaggcccagtggtggaaaacactcagctgagcaacagccaagtgaaggcc
aacagcacccctggtgaagacgtggctccagtagggggctccaaggcccagcttagcccc
agtgccgccacctcttccagtctgcctcccccacccccttcctctgctgctccgcttctc
cctccatctggaggagacactgaggacgatgagggcatgaagcacctgcagcaggaggca
gagaaaatggtggcatcactgcaggacacctctttggaggaggagtgtttcacccaggct
ctgcagcagcagcaggagagcaggaacacagcagccgctctgccgctgtctcatgaggcc
gccatgaagtggttctacaaggacccacagggagagatccagggtcctttcaccactgtg
gagatgtgcgagtggttccaggctggctacttcaccatgaccttgttggtgaagcggggc
tgtgacgagggctttcagcccctgggggatgtcatcaagatgtggggccgcgtgcccttc
gccccagggccctctccgccgcccctgctggtgagacagccaccaccaacgcagcgcccg
cagcccacccgggggcccgccgggactgtgagtcagagctcagccaacgtagaggatggg
gaggggaggatgcagaggagagggaatattgatagacaggttatgggaaacctggaccag
gagcgcctgaaaaagcaacaggagctggcagcagcagctctttatcagcagctccaacag
cagcagctattccagctcattaacaggtgcagtgagcagggtataatgccttcgatgaac
aggtcgatgtcagtgccagatacagggtccatgtgggacatgcatacctcagcttcacag
ccttcaggcggtgaagccagtctttgggacataacaatgaatccttctactcagggtcca
actcttgaacagcttcaaaagctccagcaggagaggcgagacgctgaactcagggcgaag
cgtgaggaggaggagcagcgtaagaggagggaggagaagaggaggcaacaggaggagcag
aagaggagggaggaggaggagctcttcagacgcaagcagtgtcgacagcagcaggagctg
atcatgaagttgctacagcaggccccccagcagcagggtcctggggcaggcggctcaggc
tggagtgggggtccctccactgggctcaccaaagcaggaaagtccccagctctggctctc
atggaaatgcagcaggaggcagagaggctcctgaagcagcagcagcaacagagggcccag
cagcagagagaccgccaccctggcatgtcgatgggaagctcctccatgggagggcagtgg
gttgagggtgttggcatgtggggcgggcctggaggtatggagggtaaaagtggcagtgga
agctcttcaggcagcatgggcatgtgggacgaggctgtgaagaaccagaccggcctgcgt
ggcaacagcaacaacaacatgggcttgaagaacagccgcagcagcccgtcactcagtgat
cagtacatgatgcgtcgtaagcggacagaggaggaggagaagctgctgaagctgctgcag
ggcatgaagcctcaggatggcttcaccacctggtgtgaacagatgctgcacgctctcaac
acctctgccaacaactcctcctcctctctggatgttgccactattgtggcatatctgaag
gaggtggagtctccctatgcagtgctggacttcatccggtcctacctaggggacacagtg
gaagccaaagagttcgccaaacagtttctggagcgacgtgccaaacagaaagccaaccaa
cagagacagcagcagcagttatcaaaggaagtggctggattgaacatgaacttccctctg
caggactcaatgcgaggtatgaatccaagcaccctgcagtccatgtttcaagccaaccac
atgggcaaggctggtctctacgacaaccaggggggaaagatgaaaaagaaacagcccatg
atgctgcactctgaccccagcatcttagggtactcattccacaacacgggcgagtgtctg
agcctgaatgagatggagatggtggaggattactga
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