Lates calcarifer (barramundi perch): 108902502
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Entry
108902502 CDS
T04895
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
KO
K07888
Ras-related protein Rab-5B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
lcf04144
Endocytosis
lcf04145
Phagosome
lcf04148
Efferocytosis
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108902502 (rab5b)
04145 Phagosome
108902502 (rab5b)
04137 Mitophagy - animal
108902502 (rab5b)
04148 Efferocytosis
108902502 (rab5b)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108902502 (rab5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108902502 (rab5b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108902502 (rab5b)
04031 GTP-binding proteins [BR:
lcf04031
]
108902502 (rab5b)
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
108902502 (rab5b)
Endosome - Lysosome transport
108902502 (rab5b)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108902502 (rab5b)
Exosomal proteins of other body fluids (saliva and urine)
108902502 (rab5b)
Exosomal proteins of colorectal cancer cells
108902502 (rab5b)
Exosomal proteins of melanoma cells
108902502 (rab5b)
GTP-binding proteins [BR:
lcf04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
108902502 (rab5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
Gtr1_RagA
RsgA_GTPase
MMR_HSR1
SDR-like
AAA_16
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
108902502
NCBI-ProteinID:
XP_018559901
UniProt:
A0A4W6CZA9
LinkDB
All DBs
Position
LG1:complement(3493803..3500258)
Genome browser
AA seq
216 aa
AA seq
DB search
MSSRGSGGRTNGTLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLA
QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQ
RQASPNIVIALAGNKADLAEKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAK
KMPKTDTQNPTHAARHRGVNLQDPDAHSTRACCGGN
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgagctccagagggagtggaggccgcaccaacggcacactaccacagaccaagatatgc
cagttcaagctggtgctgctgggtgacatggccgtgggcaagtccagcctggtgctgcgt
tttgtcaagggacagtttgatgagttccaggagacgaccataggagctgcattcctggcc
cagtcagtgtgtctagatgacaccacagtgaagtttgagatctgggacaccgcaggacaa
gagcgataccacagcctggctccgatgtattaccgcggagctcaggctgctatcgtcgtc
tttgacatcaccaagccggagacttttgagcgagccaaggcctgggtgaaggagctgcag
agacaggccagtcctaacattgttattgctctggctgggaacaaggctgacctggcagag
aagagactagtagagtatgaggaagcccagacgtatgctgaagacactggcctgctcttt
atggagacgtctgccaagacagccatgaacgtcaatgagctctttctggccattgcaaaa
aagatgccaaaaacagacacccagaacccgacacatgcagcgcgacatcggggagtcaac
ctccaggacccagatgcccactccacccgagcctgctgcggtgggaactag
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