KEGG   Lates calcarifer (barramundi perch): 108902502
Entry
108902502         CDS       T04895                                 
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
  KO
K07888  Ras-related protein Rab-5B
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04137  Mitophagy - animal
lcf04144  Endocytosis
lcf04145  Phagosome
lcf04148  Efferocytosis
lcf05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    108902502 (rab5b)
   04145 Phagosome
    108902502 (rab5b)
   04137 Mitophagy - animal
    108902502 (rab5b)
   04148 Efferocytosis
    108902502 (rab5b)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    108902502 (rab5b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lcf04131]
    108902502 (rab5b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108902502 (rab5b)
   04031 GTP-binding proteins [BR:lcf04031]
    108902502 (rab5b)
Membrane trafficking [BR:lcf04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    108902502 (rab5b)
 Endosome - Lysosome transport
    108902502 (rab5b)
Exosome [BR:lcf04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   108902502 (rab5b)
  Exosomal proteins of other body fluids (saliva and urine)
   108902502 (rab5b)
  Exosomal proteins of colorectal cancer cells
   108902502 (rab5b)
  Exosomal proteins of melanoma cells
   108902502 (rab5b)
GTP-binding proteins [BR:lcf04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    108902502 (rab5b)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA RsgA_GTPase MMR_HSR1 SDR-like AAA_16 Tfb2_C
Other DBs
NCBI-GeneID: 108902502
NCBI-ProteinID: XP_018559901
UniProt: A0A4W6CZA9
LinkDB
Position
LG1:complement(3493803..3500258)
AA seq 216 aa
MSSRGSGGRTNGTLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLA
QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQ
RQASPNIVIALAGNKADLAEKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAK
KMPKTDTQNPTHAARHRGVNLQDPDAHSTRACCGGN
NT seq 651 nt   +upstreamnt  +downstreamnt
atgagctccagagggagtggaggccgcaccaacggcacactaccacagaccaagatatgc
cagttcaagctggtgctgctgggtgacatggccgtgggcaagtccagcctggtgctgcgt
tttgtcaagggacagtttgatgagttccaggagacgaccataggagctgcattcctggcc
cagtcagtgtgtctagatgacaccacagtgaagtttgagatctgggacaccgcaggacaa
gagcgataccacagcctggctccgatgtattaccgcggagctcaggctgctatcgtcgtc
tttgacatcaccaagccggagacttttgagcgagccaaggcctgggtgaaggagctgcag
agacaggccagtcctaacattgttattgctctggctgggaacaaggctgacctggcagag
aagagactagtagagtatgaggaagcccagacgtatgctgaagacactggcctgctcttt
atggagacgtctgccaagacagccatgaacgtcaatgagctctttctggccattgcaaaa
aagatgccaaaaacagacacccagaacccgacacatgcagcgcgacatcggggagtcaac
ctccaggacccagatgcccactccacccgagcctgctgcggtgggaactag

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