Lates calcarifer (barramundi perch): 108902505
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Entry
108902505 CDS
T04895
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108902505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108902505
03110 Chaperones and folding catalysts [BR:
lcf03110
]
108902505
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108902505
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108902505
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108902505
Messenger RNA biogenesis [BR:
lcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108902505
Chaperones and folding catalysts [BR:
lcf03110
]
Heat shock proteins
HSP60 / Chaperonin
108902505
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108902505
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108902505
Exosomal proteins of other body fluids (saliva and urine)
108902505
Exosomal proteins of breast cancer cells
108902505
Exosomal proteins of colorectal cancer cells
108902505
Exosomal proteins of bladder cancer cells
108902505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
108902505
NCBI-ProteinID:
XP_018559903
UniProt:
A0AAJ7QMT3
LinkDB
All DBs
Position
LG1:3776754..3783001
Genome browser
AA seq
575 aa
AA seq
DB search
MFRLPTVMKQVRPVCRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
RAIAKEGFDTISKGANPVEIRRGVMLAVEAVINELKNLSKPVTTPEEIAQVATISANGDT
EIGNIISNAMKKVGRKGVITVKDGKTLHDELEIIEGMKFDRGYISPYFINTAKGQKCEFQ
DAYLLLSEKKISSVQSIVPALEIANQHRKPLVIVAEDVDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLKDMAIATGGTVFGDEALGLALEDIQPHDFGKVGEVQITKDDTLLLRG
GGSTVEIDKRAAEIAEQLENTTSDYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
VTDALNATRAAVEEGIVPGGGCALLRCIPSLDTLKPANADQKIGVDIIRRALRIPAMTIA
KNAGVEGSLVVEKILQGSAEIGYDAMQGEYVNMVEKGIIDPTKVVRTALLDAAGVASLLS
TAEAVVTEIPKEEKEMPGGMGGMGGMGGMGGGMGF
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtctaccaacagtcatgaagcaggtgaggcctgtgtgccgggcactggcacct
cacctgacgagagcctacgctaaagatgtgaagtttggagctgatgctcgcgccctcatg
ctgcagggagttgacctgctggctgatgctgtggccgtcaccatgggcccaaagggtcgc
actgtcatcattgagcagagctggggcagccctaaggtcaccaaggacggcgtgacggtg
gccaagagcatcgacctgaaggacaagtacaagaacatcggcgccaagctggtgcaggat
gtggccaacaacaccaacgaggaggccggtgacggcaccactactgctacggtgctggcc
cgtgccatcgccaaggagggctttgacaccatcagcaaaggtgccaaccctgtggagatt
cgccgtggagtcatgttggcagtggaagccgtaatcaatgagctgaaaaatctctccaag
ccggtcacaacccctgaggagattgcacaggttgctacaatctcagccaatggagacact
gagatcggtaacatcatctccaatgccatgaagaaagttggccgcaagggagtcatcact
gtcaaggatgggaagactctgcacgacgagctggaaatcattgagggtatgaagtttgac
cgtggttacatctccccttacttcatcaacactgccaaaggtcagaagtgtgagttccag
gacgcctacctgctgctgagtgagaagaagatctccagcgtccagagcatcgtaccagct
ctggagattgccaaccaacaccgcaaaccgctggtcattgttgctgaggatgtggatgga
gaggccctcagcaccttggtgctcaacaggcttaaggttgggcttcaggtagttgctgtt
aaagccccaggctttggagataacaggaagaaccagctgaaggatatggccatcgccacc
gggggcactgtgtttggagatgaggccctgggcctggcccttgaagacatccagcctcac
gacttcggtaaggtcggcgaggtgcagattactaaagatgacaccctgctgctgagggga
ggtggcagcacagttgagatcgacaaacgggcagcagagatcgccgagcagctggagaac
accaccagcgactacgagaaggagaaactcaatgagaggctggccaagctgtcagacgga
gtggctgtgctcaaggtcggaggaacaagtgatgtggaggtgaatgagaagaaggaccgt
gtgacagacgctctgaacgccacccgggcagctgtggaggaggggattgtaccaggtgga
ggctgcgctctgctgcgctgcatcccatctctggataccctcaaacctgccaacgctgac
cagaagatcggcgttgatatcatcaggcgggcgctccgcatccccgccatgaccatcgcc
aaaaacgcaggcgtggagggttcactggtggtggagaagatcctgcagggatcagctgag
atcggctacgatgccatgcagggagagtacgtcaacatggtggagaagggcatcatcgac
cccaccaaggtggtgaggacggcgctgttggacgctgcaggagtagcctctctgctctcc
accgccgaggctgtcgtcacggagatccccaaggaggagaaggagatgccgggaggcatg
ggtggcatgggaggcatgggcgggatgggaggaggcatgggtttctaa
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