Lates calcarifer (barramundi perch): 108902542
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Entry
108902542 CDS
T04895
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4 isoform X2
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108902542
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108902542
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108902542
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
108902542
NCBI-ProteinID:
XP_018559975
UniProt:
A0A4W6CZ51
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Position
LG7_2:complement(12652191..12659157)
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AA seq
646 aa
AA seq
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MDDWDEEATATSAITLTSHTSNEVTQGDSWNAGGGEFGGGRGGRGKGRRGGFTSSFSGDE
NGNDSWNNTGGERGGFRDRGGRGRGRGFCRTDPSEFTGDDDGVCENGFRGGSRGGRGSRG
GRGFRQGGERGGRGGFGGGYRGKDEQVFAQGEDKDPGNDASEGDRPKITYIPPTLPEDED
AVFAHYETGINFDKYDDIMVDVSGTNPPEALMTFDEAMLCESLRKNVSKSGYVKPTPVQK
HGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSELQEPEAIIVAPTRE
LINQIYLEARKFAFGTCVRPVVVYGGVSTGYQIREISRGCNVLCGTPGRLLDMIGRGKVG
LQKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEDRQTLMFSATYPEDIQRMAADFL
KTDYLFLAVGVVGGACSDVEQTFIEVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFI
ATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAARGLDIPDVQHVVNFD
LPNNIDEYVHRIGRTGRCGNVGRAVSFYDPDADVQLARSLVTVLSKAQQVVPSWLEEHAF
SGLSTGFNPPRKNFASTDSRKGGSFQDNMMKSQPAALAAADEEEWE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggatgattgggatgaagaggcaactgctaccagtgctattacactaaccagccacacc
tcaaatgaagtcacacaaggagactcatggaacgctggtggtggtgaatttggagggggt
cgcggtggaagaggcaaaggcagacgagggggatttacaagctcattctcaggtgatgag
aatgggaatgacagctggaacaatacaggaggggaaagaggtggtttcagagatagaggc
ggtcgagggcgtggcagaggattttgcagaacggatccgagtgaattcactggagatgac
gatggagtgtgtgaaaatgggtttagaggaggaagccgaggaggaagaggcagcagagga
ggtcgaggtttcagacaaggtggtgagcggggtggcagaggaggctttggaggaggttac
agaggaaaagatgaacaggtctttgctcaaggggaagataaagatccagggaatgatgca
agtgagggtgacagaccaaagatcacatacattccaccaaccctacctgaagacgaagac
gccgtgtttgcccactacgagacaggcattaactttgataagtatgacgacattatggtt
gatgtcagtggaaccaatccaccagaggcactcatgacttttgatgaggcaatgttgtgc
gaatccctgagaaaaaacgtcagcaagtctggttacgtgaagccgacccctgtgcagaag
catggcatcccgatcatctctgccggcagagatctcatggcctgtgcccagactggatct
ggtaaaacggctgcgttccttctccccattctgcagcagctgatggcggacggtgtggca
gccagtcgcttcagtgagctgcaggagcctgaggccatcattgtggccccaaccagggag
ctcatcaatcagatttacctagaggccaggaagtttgctttcgggacgtgtgtgcgtccg
gtggttgtttatggtggagtcagcactggataccaaataagggaaatatcaaggggctgc
aatgtgctgtgtggaacaccagggagactgttggatatgattggaagaggaaaggttggg
ctgcagaagctgcggtacttggtgctggatgaggctgaccgtatgctggacatgggcttc
gagcctgacatgcggcgcctggtgggctctcctggaatgccatccaaggaggaccgtcag
actctgatgttcagtgccacctatcctgaggacatccaaaggatggcggcagacttcctc
aagactgactatttgttcctggctgtgggtgtggtgggaggagcctgcagcgatgtggag
cagacatttattgaagttaccaaattctccaagagggagcagctacttgacctcctgaag
accacaggaacggagcgcaccatggtgtttgtggaaaccaagagacaggctgattttatt
gccactttcctgtgccaggagaaggttccaaccaccagcattcatggtgaccgcgagcag
cgtgagcgagagcaggccctggcagacttccgctccggcaagtgtccggtcctggtggcc
acctctgtcgccgcccgtggcctggatattccagatgtgcagcatgtggtgaactttgac
ctccccaacaacattgatgaatatgtccaccgtattgggagaaccggccgctgcggtaac
gtcgggagggcggtgtctttctacgacccagacgctgacgtccagctggctcgatccttg
gtcacagtcctctccaaggctcagcaggtagtgccctcatggttagaggagcacgcattc
tctggcctcagtacaggcttcaacccccccaggaagaactttgcctccacagactccagg
aagggaggatcctttcaggacaacatgatgaagagccagccggctgctctggctgcagct
gacgaggaagaatgggaatag
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