Lates calcarifer (barramundi perch): 108902629
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Entry
108902629 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-4-like
KO
K04861
voltage-dependent calcium channel alpha-2/delta-4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04260
Cardiac muscle contraction
lcf04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108902629
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
108902629
04261 Adrenergic signaling in cardiomyocytes
108902629
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108902629
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108902629
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA_3
VWA_2
dCache_1
VWA
CobT_C
ArsR
Motif
Other DBs
NCBI-GeneID:
108902629
NCBI-ProteinID:
XP_018560084
UniProt:
A0AAJ7VLG9
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Position
LG10:1543975..1596470
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AA seq
1108 aa
AA seq
DB search
MSGVGSRMEGRSTPGFMKLLLRILGFFCLWITAQAQMKIPPETVQQWASVFAVQLRDLTT
KYSGSLLLQKKLKDVESIIKIVELDGDDLVKDYSDEIERMLGSKMKSVKRLAESAEDADL
YHEFNASLEFDYYNSMLINKVDEDGNYAELGGEFPLEENEHFNNLLVNTQQSDIQVPTNV
YNKDPNILNAIYNSEALNDVFISNFQRDPTLTWQYFGSSTGFFRIYPGIKWTPDSNGVAA
FDCRNRNWYIQAATSPKDIIIMVDISGSMKGLKMTIAKHTINTILDTLGENDFVNVIAYT
DYVRYVEPCFRGTLVQADLDNREHFKVLVEELHVKGEAKIKPAMKEAFKILNEARANGQG
SMCNQAIMLITDGAMEDFESVFEEFNWPERRVRVFTYLIGREMTFAQNTKWIACNNKGYY
THISTLADVQENVMEYLHVLSRPMVINHDHDIIWTEAYMDTVLPNTEELFTTKAQSLLLM
TSVAMPVFSKKKETLSHGILLGVVGSDIPLMEVMKLAPRYMLGAHGYAFLITNNGYILAH
PDLRPLYKDGKKLKPKPNYNSVDLSEVEWEDTDEMLRTAMVKGETGSISLNIRASVDKGK
RPLYLVNEYFYTNIDETPFSFGMVLTRGHGRLMFVGNVSVEEGLHDLTSPDLSIASEWTY
CETDIDPAHRKYSQLQAAIRYLLGKEPDLECDEVLLQQTLFDAVVTAPLEAYWNALMLND
RVEPGVETAFLGTRAGLMRIMRYAGAETRVAKKFLTPADKDNLFTIDHFPLWYRLAVENT
PGIFYYYPVNDKGVKYAVATTAVTVSSEGKTAMAGAIGVQMSLDLLEKRFWAIAKQPSDT
DCSNIEGVCPLSCESVDLNCFLVDNNGFILLSKERNEVGRFFGEVDGSVMASLIKMGMFK
KVSLFDYQAMCKNSHHHASSARPLLSPFYGIVALMRWFFSNALMFLLDFNLCGLWHSDYF
VDAKAGYHTSHKQKKVEALQPCDTAYPGFMYDYSVREANSLIKCGRCQKMFVVQQIPDSN
LVLVVTQADCDCSRQYGPIPLEPKEIKYNATVKCNRMKSQKVRRRPQSCHAYHPKEDAKD
CGGASAISLSVSLFSTCLLVSLVLHHWT
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggtcgggagcaggatggagggcaggagcacgccaggattcatgaagcttctc
ctgaggattctgggatttttctgcctgtggattacagctcaggctcagatgaagatccca
ccagagacggtgcagcagtgggcgtccgtgttcgccgttcaacttcgagacttaaccacc
aaatactccggctctctgctgctgcagaagaaattgaaggatgtggagtccatcattaaa
atcgtggagctggacggagacgacttggtgaaggattattcagatgaaatcgaacgaatg
ttagggagcaagatgaagtcagtgaagaggttagcagaatcggcagaagacgctgacctg
taccacgaattcaacgcttcattagagttcgactactacaactccatgttgatcaacaag
gttgacgaggacgggaactatgcggaactaggtggagagtttccactggaggagaatgaa
catttcaacaacctgctggtgaacacgcagcagagcgacatccaggtccccaccaacgtc
tacaacaaagatccgaacatccttaacgccatctacaactcagaggcgttaaatgatgtc
ttcatcagtaacttccagagggatcccacactcacctggcagtactttggcagctccacc
ggcttcttcaggatctaccctggtattaaatggactccagactccaacggagtggcagct
tttgactgcaggaacagaaactggtacatccaggccgccacgtctccgaaggacatcatc
atcatggtggacatcagcggcagcatgaaggggctgaagatgaccatcgccaaacacacc
atcaacaccatcctggacacgctgggggagaacgacttcgtcaacgtcattgcttacacg
gactatgttcgttatgtggagccgtgcttcaggggaaccctggtccaggccgacttggac
aacagagagcattttaaggtgctggtggaggagctgcatgttaaaggagaagcaaagatc
aagcccgccatgaaggaagccttcaaaatcctcaacgaggcgagggcgaacggtcagggc
agcatgtgtaaccaggccatcatgctgatcactgacggagccatggaggactttgagtct
gtgttcgaggagttcaactggcctgagcgcagggtgcgagtcttcacctatctgatcggc
agagagatgaccttcgctcagaacaccaagtggatcgcctgcaacaacaaaggttactac
acacacatctccacgctggccgatgtgcaggagaacgtcatggagtacctgcacgtgctc
agccgacccatggtcatcaaccacgaccatgacatcatctggaccgaggcctacatggac
accgtgcttccaaacactgaagagctcttcaccaccaaagctcagagtctgctgctgatg
acgtctgtggccatgccggtcttcagtaagaagaaggagacgctgtcccacgggatcctg
ctgggtgtggtcggctcggacatcccgctgatggaggtgatgaagctggcgcccagatac
atgctgggagctcacggctacgccttcctcatcaccaacaacggctacatcctggctcac
cccgaccttcgacctctgtacaaagacggaaagaaactgaagccgaagccaaactacaac
agtgtggatctgtctgaggtggagtgggaggatacggacgagatgctgagaacagccatg
gtgaaaggagagaccggcagcatcagcctgaacatcagagcgtctgtggataaagggaaa
agacctctgtacctcgtcaacgaatacttctacacaaacatcgatgagacacctttcagc
tttggcatggtgctgacgaggggtcacgggaggctgatgtttgtgggaaacgtgtctgtg
gaggaagggctgcatgacctcacctccccagacctgagcatcgcctcagagtggacttac
tgtgagaccgacatcgaccccgctcacagaaaatactcacaacttcaggccgccatccgc
tacctgctggggaaggagcccgacctcgagtgtgatgaggtgttgctgcagcagacgctg
tttgacgccgtggtcaccgctccgctggaggcctactggaacgccctgatgctcaacgac
agggtggagcccggggtggagaccgccttcctcgggactcgtgccggcctgatgaggatc
atgagatacgcaggagcggagaccagagtggcaaaaaagttcctgactccggctgataaa
gacaacctgttcaccatcgaccatttccctctgtggtaccgcctggccgtggaaaacact
cctgggatcttctactactaccccgtcaatgacaaaggcgtgaagtacgctgtagcgacg
acggcagtgacggtgtcctctgaaggaaagacggcgatggctggagctatcggggtgcag
atgtccttggatttgctggaaaagaggttctgggccatcgccaagcagcccagcgacaca
gactgttcaaacatcgaaggcgtgtgtccgctcagctgtgagagtgtggatcttaactgt
ttcctggtcgacaataacggcttcatcctgctgtccaaagagaggaacgaggtcggacgc
ttctttggcgaggtggacggctctgtcatggcgtcgctgatcaagatgggaatgtttaaa
aaagtgtcgttgttcgactaccaggcgatgtgtaagaacagtcatcatcacgccagcagc
gcccgacctctgctcagcccgttttatggcatcgtggcattgatgagatggttcttctcc
aacgctctgatgttcctgctggactttaacctctgtggtctctggcactcggattatttt
gtggacgccaaggctggttatcacacatctcataagcagaagaaggtggaggcgctgcag
ccctgcgacacggcgtatcccggcttcatgtacgactactccgtcagggaagccaacagc
ctcatcaagtgtggacgctgccagaagatgtttgtggtgcagcagattcccgacagtaac
ctggttctggtcgtgactcaggccgactgtgactgttctcgtcagtacggaccgatccca
ctggagcccaaagagatcaaatataatgccacagttaagtgcaataggatgaaatcacag
aaggtgcggcggcgaccgcagtcctgtcacgcctaccacccgaaggaggacgctaaagac
tgtggcggggcgtcggccatctccctgtctgtttctctgttctccacctgtctcctcgtc
tcattggtcctccaccactggacgtaa
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