Lates calcarifer (barramundi perch): 108902652
Help
Entry
108902652 CDS
T04895
Symbol
colgalt1a
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00310
Lysine degradation
lcf00514
Other types of O-glycan biosynthesis
lcf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108902652 (colgalt1a)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
108902652 (colgalt1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108902652 (colgalt1a)
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
108902652 (colgalt1a)
Glycosyltransferases [BR:
lcf01003
]
O-Glycan biosynthesis
O-linked Gal type
108902652 (colgalt1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Motif
Other DBs
NCBI-GeneID:
108902652
NCBI-ProteinID:
XP_018560109
UniProt:
A0A4W6FSA7
LinkDB
All DBs
Position
LG11:complement(8148483..8154936)
Genome browser
AA seq
612 aa
AA seq
DB search
MPRVNFACLPVVVLLLFLSCCGPARGYFAEERWSPESPLLAPRVLLALICRNSEHSLPYF
LGTIERLNYPKERMALWVATDHNKDNTTAILRDWLVKVQNLYHYVEWRPKEEPRHYEDED
GPKHWTDLRYEHVMKLRQVALESAREMWADYFMLADCDNLLTNPDVLWKLMKENKTIIAP
MLESRAAYSNFWCGMTSQGYYKRTPAYIPIRKQVRKGCFAVPMVHSTFLIDLRKEASRQL
AFHPPRPDYSWPFDDIIVFAFSARMADVQMFVCNKETYGYFPVPLRSHNTLRDEADSFLH
SLLEVYVRKTPVMPSKYIRVPRKQPDKMGFDEVFMINLQRRTDRRDRMLRALYEQEIACK
VIAAVDGKAMNVSEIHALGIHMLPGYSDPYHGRPLTKGELGCFLSHHKIWKEIVKRRLRI
SLVIEDDLRFEVFFKRRLMNLMSEVEEEGLDWDLIYIGRKRMQVDHPEKAVPNIHNLVEA
DYSYWTLGYMISLQGAEKLLKAEPLKKILPVDEFLPIMYNKHPVSDYMEQFETRDLKAFS
AEPLLVYPTHYTGDPGYISDTETSTVWDNDKVRTDWDRTRSGKTREQAKISTEAQNSDVL
QSPLDSTARDEL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgccccgtgtaaacttcgcctgcctccccgtcgttgtgctcctcttgttcctgtcctgc
tgcggtccagcccggggatattttgcggaggagcgctggagccccgagtccccgcttctc
gctccccgggtcctcctcgccctcatctgcagaaactccgaacactctttgccgtatttc
ctcggtaccattgagcgcctcaactatcctaaggagcgtatggctctgtgggtagcgact
gatcataacaaggacaacaccacagccattctgcgtgattggcttgtcaaggtgcagaac
ctttaccattacgtggaatggaggccaaaagaggaacccagacattatgaggatgaagat
ggtcctaaacattggacagaccttcgctatgagcacgttatgaagcttcgccaagtagca
ctggagtcagctcgtgagatgtgggcggactactttatgttggcagactgtgataacctc
ctcaccaatcctgatgtgctctggaagctcatgaaagagaacaagaccattattgcacca
atgcttgaatcccgtgcagcctattcaaacttctggtgtggaatgacctcacagggttac
tataagcgcacccctgcctacatacccataaggaagcaggtgcgtaagggctgttttgct
gtacccatggtccactccaccttcctgatagacctcaggaaagaggcatccagacagctg
gcctttcacccaccacgcccagattacagctggccttttgatgacatcattgtgtttgcc
ttctctgctcggatggcagatgttcaaatgtttgtatgtaacaaagagacctatggttac
ttccctgtgccacttcgatctcataatactttgcgagatgaagctgacagtttcttgcac
tccctgctggaggtttatgtgcgaaaaaccccagtgatgccttccaaatacatacgtgtt
cctagaaaacaacccgacaaaatgggctttgatgaggtgttcatgataaacctgcagagg
cggactgaccggcgagatcgcatgctgagggcactgtacgagcaggagattgcttgtaag
gtcattgcagctgtagatggaaaagcaatgaatgtcagtgaaattcatgcattgggcatc
catatgctccctggatacagtgacccctatcatggtcgcccactgacaaaaggagagctg
ggatgcttcctttctcaccataaaatctggaaagagattgtgaagcgacgcctgcgcatc
tctctggtgattgaagatgacctgcgatttgaggttttcttcaaacgtcgcttgatgaac
ttgatgagtgaagtggaggaagagggactggactgggacctcatttatatcggtcggaag
agaatgcaagtggatcacccagagaaagcagtgcctaatatacacaacctagtggaagca
gactattcatattggacgctaggttatatgatatcattacaaggagctgagaagcttctg
aaagcggaaccactaaaaaagattttgccagtggatgagtttcttcctatcatgtacaat
aaacaccctgtgtctgattatatggaacagtttgaaaccagggacctgaaggcattttct
gctgagccacttctagtgtatccaacacactacacgggcgacccaggctacatcagcgac
actgagacctccacagtgtgggacaatgacaaggtccgcacagactgggacagaacgcgc
tcaggaaaaacccgggagcaggctaagatcagcactgaggcccagaactcagacgtgttg
cagtcgccattggacagcacagcacgggatgagctatga
DBGET
integrated database retrieval system
