Lates calcarifer (barramundi perch): 108902696
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Entry
108902696 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA splicing regulator USH1G
KO
K21878
Usher syndrome type-1G protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
108902696
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108902696
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
USH complex and associated proteins
108902696
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
Ank_4
Ank
Ank_5
Ank_3
SAM_1
SAM_7
SAM_2
Motif
Other DBs
NCBI-GeneID:
108902696
NCBI-ProteinID:
XP_018560175
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All DBs
Position
LG11:9246123..9252120
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AA seq
470 aa
AA seq
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MNDRYHKAARDGYLDLLKEATRKDLNAPDEDGMTPTLWAAYHGNLEALRLIVARGGNPDK
CDIWGNTPLHLAAANGHLNCLFFLVSFGANIWCLDNDYHTPLDMAATKNHMDCVRYLDSI
AAKQTGLNPKLVGKLKDRAFREAERRIKECVKMQKKHHKRMERKFHKEASEASASDVMSF
SSYTSSSLSHKLRNFNAATVSVPYSQATLHATNRGKTKIQKKLERRKQGDGTFKIYEDGR
KSVRSLSGLQLGNDVMFVKQGTYVNPKDRGRRNIRDMFPRDNDDAISRAMSEPDLHGPDV
DYSEISTDSGHDSLFNRPGLGTMVFRRNYVSGGLFDLGGRDEVDRSSNNVRLRSRLQHYP
SVDEDSIGSARSLQERNVEDLPWEEIELGLDDDDEPETSPLEVFLATQSMSEFFAIFKRE
KIDLEALLLCSDHDLKSIHIPLGPRKKILDACKRRLETVEDPDCIEDTEL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacaggtaccacaaggcggcccgggacggttacctggacctgctgaaggaggca
actcggaaggatctcaacgcgccggatgaggatggcatgacaccgacgttatgggcggct
tatcacggcaacctggaggctctgcggctcatcgtggcgaggggaggaaaccctgacaag
tgtgacatatgggggaacacaccgctccacctggcagctgccaatggtcacctcaactgc
cttttcttcctggtgtcttttggtgccaacatatggtgcctggacaacgactaccacaca
cctttggacatggctgccacaaagaatcacatggattgtgtccgctacctggattccatc
gcagccaagcagacaggcctcaaccccaagctggttggcaagttgaaggaccgggccttt
cgagaagccgagcgacggatcaaagagtgtgtgaagatgcagaagaaacaccacaaacgc
atggagcggaagtttcacaaagaggcttcagaggcctctgcatctgacgtcatgagtttt
tccagttacaccagcagctctcttagccacaagcttcgcaacttcaatgcagcaaccgtc
agtgtgccatattcacaggctactctccatgccacaaaccgagggaagacaaagatccag
aagaagttggagaggaggaaacaaggagatgggaccttcaaaatctatgaggatggaagg
aagagtgtacgctctctctctggacttcagctgggcaacgatgtcatgtttgtcaaacag
gggacatatgtgaacccaaaggaccgtggccggcgcaacattcgtgacatgttccccaga
gacaacgacgatgccatttcacgtgccatgagtgagccggatctccacgggcccgatgtg
gactattctgagatcagcactgactcgggacatgattccctgttcaaccgacccggtttg
ggcaccatggtctttaggaggaactatgtgagtggagggctgtttgaccttggtggtcgg
gatgaggtggaccggtcaagcaataatgtgcgcttacggagtcggctgcagcattaccca
agtgtagatgaagacagcatcggaagtgcgcgcagcctgcaggagaggaacgtagaggac
ctgccttgggaagaaatcgaattagggctggacgatgatgatgagcctgaaacaagcccc
ctggaagtcttcctagccacacaaagcatgagcgagtttttcgccatcttcaagagggag
aagattgaccttgaagcactgctgctgtgctctgaccatgacctaaagagcatccacatc
cccttaggaccgaggaaaaagatcttagatgcctgtaaaagacgactggaaaccgtagag
gatccagactgcatcgaggacacagaactgtga
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