Lates calcarifer (barramundi perch): 108902750
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Entry
108902750 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM16-like
KO
K12006
tripartite motif-containing protein 16 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108902750
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108902750
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108902750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-B_box
ANCHR-like_BBOX
Herpes_UL36
IMD
Motif
Other DBs
NCBI-GeneID:
108902750
NCBI-ProteinID:
XP_018560258
UniProt:
A0AAJ7QN44
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Position
LG11:9254774..9258051
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AA seq
507 aa
AA seq
DB search
MATLRNNSEENLKEVQHGASVREEPEEPTTQTSGTLVPHDVLCDSCMDSPSKALKSCLTC
LVSYCEAHLRPHLENTKFQNHRLVDPLHDIDCRTCEVHRLPLDRFCLMDGCCVCLDCESQ
EHKGHTIASVREARIQIETEMRKKQEEISQSTSAAEKAIKKLQSNNDLIMSSVQEICVLV
EQQFSRMQTTVEEAEKRGDGMLEREQRQALRQADGIQAHLEQRRTKLMKTLAQMNKMSKI
MSDVDFLQEYSEWKKGVADACLPNVYINRMDHLTSYVQVVTDATQELCDLILSSYKDKLS
MFCKGGAKSQMPESLSSVPDPETREDFLKYTRSLTFDPDTTHHFLRVTEDNRKLTNTSPW
QHSYPDHPDRFEYWRQAMTSQSIYLGRHYIEAEMSGEGAHVGFTYKSIDRKGEQNTCCIT
GNDFSWCMGRNSRGFFAWHAGLETSLEVTDIKRIGLYVDFHQGSVSFYDVTGPMRLLHKY
KADFIEPLYVTVWLSKKDNVVSLVGAK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcaactctccgcaataacagtgaggagaatttgaaggaggttcaacacggtgccagc
gtgagggaggaaccggaggaacctaccactcagacatctggcactctggttccacatgat
gtgctgtgtgactcgtgcatggacagccccagcaaggccctgaaatcctgcctgacctgt
ctggtttcttactgtgaggcccatctcagaccccatctggagaacaccaaatttcaaaac
caccgcctggtggaccccctccacgacatcgactgtcggacttgtgaggttcatcgactt
cctctcgaccgcttctgtctgatggacggctgctgtgtgtgtctggactgcgagagccag
gagcacaaaggacacacgattgcatctgtacgggaggcacgcatacagattgagactgag
atgcggaagaaacaagaagagatcagtcagagtacctcagcagctgagaaagcaattaaa
aagctgcagagcaacaatgacttaattatgtcttcagtgcaggagatctgtgttcttgtt
gaacagcagttctccagaatgcagacaactgtggaggaggccgagaaaaggggcgatgga
atgctggagagagagcagagacaagccctcagacaggccgatggaatccaggcacatctg
gagcagaggagaacaaagctgatgaaaacattggctcaaatgaacaaaatgtccaagatc
atgtctgatgttgacttcctgcaggagtactcagagtggaaaaaaggagtagcagatgca
tgtttgcccaatgtgtacatcaaccgcatggaccatctaacctcttatgtccaagtagtg
actgatgctacacaggagctgtgtgatctgattctctcctcctacaaggacaaactgagc
atgttttgtaaaggtggtgctaaatcccagatgccggaatctctttcatccgtgccagat
cctgagacccgagaggactttttgaaatatacaagaagtttgacctttgacccagacacc
acccaccatttcttgcgtgtaacagaggacaacagaaagctgaccaacaccagcccctgg
cagcacagctacccagaccaccctgatcgctttgagtattggcggcaggcaatgacttca
cagagtatttacttagggaggcactacattgaagcagagatgagcggggaaggagctcac
gtgggcttcacgtacaagagcatcgatcgtaagggagaacaaaacacctgttgcatcact
ggaaatgacttctcatggtgcatgggaaggaacagccgaggtttctttgcctggcatgct
ggtctggagacatccttggaagttactgatataaaaaggatcggcttatatgttgatttt
caccaaggttctgtgtctttttatgatgttactggtcctatgaggctgctccacaagtac
aaagctgatttcatagaacccttatatgttactgtctggctgtcaaagaaagacaatgta
gtttctctggttggtgcaaaatga
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