KEGG   Lates calcarifer (barramundi perch): 108902772
Entry
108902772         CDS       T04895                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03018  RNA degradation
lcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108902772
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108902772
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108902772
   03041 Spliceosome [BR:lcf03041]
    108902772
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108902772
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108902772
Spliceosome [BR:lcf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108902772
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 108902772
NCBI-ProteinID: XP_018560287
UniProt: A0A4W6E2U8
LinkDB
Position
LG17:complement(18722046..18741102)
AA seq 153 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGSRGRGMTG
PGRGQQQQQQQQQQQQQQQDKKPGKPQGMKNQH
NT seq 462 nt   +upstreamnt  +downstreamnt
atgcttcccctatcactgctgaagactgcccagaaccatcctatgctggtcgagctgaag
aacggagagacgtacaacggtcacctggtcagctgcgacaactggatgaacatcaacctg
agagaagttatctgcacctcaagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagcaccatcaagtatctgcgaatcccagacgagatcatcgacatggtgaag
gaggaggtggtgtcgaagggccgcggacgaggaggcgcccagcagaacaaacagcagggc
aaaggaagaggaggagccgggcgaggtctgtttggcagtcgtggcagaggaatgaccggc
ccgggtcggggccagcagcagcagcagcaacagcagcagcagcagcagcaacagcaggat
aagaaaccaggaaaaccacagggaatgaagaaccagcactga

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